Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00281 and H281DRAFT_00282 are separated by 443 nucleotides H281DRAFT_00282 and H281DRAFT_00283 overlap by 1 nucleotides H281DRAFT_00283 and H281DRAFT_00284 are separated by 160 nucleotides
H281DRAFT_00281: H281DRAFT_00281 - Spermidine synthase, at 301,365 to 302,276
_00281
H281DRAFT_00282: H281DRAFT_00282 - Protein of unknown function (DUF3311), at 302,720 to 302,959
_00282
H281DRAFT_00283: H281DRAFT_00283 - solute:Na+ symporter, SSS family, at 302,959 to 304,509
_00283
H281DRAFT_00284: H281DRAFT_00284 - Predicted membrane protein, at 304,670 to 305,884
_00284
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 302.364 kb on - strand at 302.574 kb on + strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.576 kb on + strand at 302.576 kb on + strand at 302.576 kb on + strand at 302.577 kb on - strand at 302.700 kb on - strand at 302.700 kb on - strand at 302.702 kb on + strand at 302.852 kb on + strand, within H281DRAFT_00282 at 302.907 kb on - strand, within H281DRAFT_00282 at 302.908 kb on + strand, within H281DRAFT_00282 at 302.909 kb on - strand, within H281DRAFT_00282 at 302.909 kb on - strand, within H281DRAFT_00282 at 302.990 kb on + strand at 303.140 kb on - strand, within H281DRAFT_00283 at 303.206 kb on - strand, within H281DRAFT_00283 at 303.370 kb on + strand, within H281DRAFT_00283 at 303.371 kb on - strand, within H281DRAFT_00283 at 303.485 kb on - strand, within H281DRAFT_00283 at 303.485 kb on - strand, within H281DRAFT_00283 at 303.547 kb on + strand, within H281DRAFT_00283 at 303.547 kb on + strand, within H281DRAFT_00283 at 303.548 kb on - strand, within H281DRAFT_00283 at 303.548 kb on - strand, within H281DRAFT_00283 at 303.673 kb on + strand, within H281DRAFT_00283 at 303.674 kb on - strand, within H281DRAFT_00283 at 303.676 kb on - strand, within H281DRAFT_00283 at 303.683 kb on - strand, within H281DRAFT_00283 at 303.768 kb on + strand, within H281DRAFT_00283 at 303.886 kb on + strand, within H281DRAFT_00283 at 304.033 kb on + strand, within H281DRAFT_00283 at 304.165 kb on + strand, within H281DRAFT_00283 at 304.237 kb on + strand, within H281DRAFT_00283 at 304.237 kb on + strand, within H281DRAFT_00283 at 304.237 kb on + strand, within H281DRAFT_00283 at 304.342 kb on - strand, within H281DRAFT_00283 at 304.487 kb on - strand at 304.487 kb on - strand at 304.539 kb on - strand at 304.752 kb on - strand at 304.907 kb on - strand, within H281DRAFT_00284 at 305.012 kb on + strand, within H281DRAFT_00284 at 305.012 kb on + strand, within H281DRAFT_00284 at 305.012 kb on + strand, within H281DRAFT_00284 at 305.013 kb on - strand, within H281DRAFT_00284 at 305.073 kb on - strand, within H281DRAFT_00284 at 305.073 kb on - strand, within H281DRAFT_00284 at 305.222 kb on + strand, within H281DRAFT_00284 at 305.223 kb on - strand, within H281DRAFT_00284 at 305.273 kb on + strand, within H281DRAFT_00284 at 305.274 kb on - strand, within H281DRAFT_00284 at 305.276 kb on - strand, within H281DRAFT_00284 at 305.276 kb on - strand, within H281DRAFT_00284
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 302,364 - +3.9 302,574 + +0.7 302,575 - +0.8 302,575 - +0.7 302,575 - +0.5 302,576 + -0.0 302,576 + +0.4 302,576 + -0.4 302,577 - -0.2 302,700 - +0.5 302,700 - +0.0 302,702 + -0.4 302,852 + H281DRAFT_00282 0.55 +0.6 302,907 - H281DRAFT_00282 0.78 +0.2 302,908 + H281DRAFT_00282 0.78 +0.9 302,909 - H281DRAFT_00282 0.79 +0.2 302,909 - H281DRAFT_00282 0.79 -0.1 302,990 + -0.4 303,140 - H281DRAFT_00283 0.12 +0.3 303,206 - H281DRAFT_00283 0.16 -0.5 303,370 + H281DRAFT_00283 0.26 +0.6 303,371 - H281DRAFT_00283 0.27 -1.3 303,485 - H281DRAFT_00283 0.34 -0.8 303,485 - H281DRAFT_00283 0.34 +0.2 303,547 + H281DRAFT_00283 0.38 -0.0 303,547 + H281DRAFT_00283 0.38 +1.9 303,548 - H281DRAFT_00283 0.38 +1.5 303,548 - H281DRAFT_00283 0.38 +1.1 303,673 + H281DRAFT_00283 0.46 -0.2 303,674 - H281DRAFT_00283 0.46 -0.1 303,676 - H281DRAFT_00283 0.46 +0.7 303,683 - H281DRAFT_00283 0.47 +0.1 303,768 + H281DRAFT_00283 0.52 -0.3 303,886 + H281DRAFT_00283 0.60 +0.1 304,033 + H281DRAFT_00283 0.69 -0.2 304,165 + H281DRAFT_00283 0.78 +0.2 304,237 + H281DRAFT_00283 0.82 +0.4 304,237 + H281DRAFT_00283 0.82 +0.4 304,237 + H281DRAFT_00283 0.82 -0.5 304,342 - H281DRAFT_00283 0.89 +0.9 304,487 - -0.2 304,487 - +0.2 304,539 - +0.1 304,752 - -0.4 304,907 - H281DRAFT_00284 0.20 -1.3 305,012 + H281DRAFT_00284 0.28 +0.0 305,012 + H281DRAFT_00284 0.28 -0.4 305,012 + H281DRAFT_00284 0.28 -1.5 305,013 - H281DRAFT_00284 0.28 +0.2 305,073 - H281DRAFT_00284 0.33 +0.3 305,073 - H281DRAFT_00284 0.33 -0.3 305,222 + H281DRAFT_00284 0.45 -1.9 305,223 - H281DRAFT_00284 0.46 -0.1 305,273 + H281DRAFT_00284 0.50 -0.1 305,274 - H281DRAFT_00284 0.50 +2.3 305,276 - H281DRAFT_00284 0.50 -1.9 305,276 - H281DRAFT_00284 0.50 -0.3
Or see this region's nucleotide sequence