Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00210 and H281DRAFT_00211 are separated by 619 nucleotides H281DRAFT_00211 and H281DRAFT_00212 are separated by 222 nucleotides
H281DRAFT_00210: H281DRAFT_00210 - Curli biogenesis system outer membrane secretion channel CsgG, at 226,892 to 227,569
_00210
H281DRAFT_00211: H281DRAFT_00211 - D-galactonate transporter, at 228,189 to 229,508
_00211
H281DRAFT_00212: H281DRAFT_00212 - 3-oxoacyl-[acyl-carrier protein] reductase, at 229,731 to 230,489
_00212
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1
2 at 227.389 kb on + strand, within H281DRAFT_00210 at 227.389 kb on + strand, within H281DRAFT_00210 at 227.389 kb on + strand, within H281DRAFT_00210 at 227.392 kb on - strand, within H281DRAFT_00210 at 227.392 kb on - strand, within H281DRAFT_00210 at 227.513 kb on + strand at 227.514 kb on - strand at 227.726 kb on + strand at 227.769 kb on + strand at 227.770 kb on - strand at 227.770 kb on - strand at 227.838 kb on - strand at 227.858 kb on - strand at 227.862 kb on + strand at 227.863 kb on - strand at 228.032 kb on + strand at 228.032 kb on + strand at 228.032 kb on + strand at 228.032 kb on + strand at 228.032 kb on + strand at 228.033 kb on - strand at 228.033 kb on - strand at 228.033 kb on - strand at 228.246 kb on - strand at 228.260 kb on + strand at 228.260 kb on + strand at 228.260 kb on + strand at 228.261 kb on - strand at 228.262 kb on + strand at 228.263 kb on - strand at 228.263 kb on - strand at 228.263 kb on - strand at 228.263 kb on - strand at 228.263 kb on - strand at 228.263 kb on - strand at 228.263 kb on - strand at 228.313 kb on + strand at 228.313 kb on + strand at 228.314 kb on - strand at 228.338 kb on + strand, within H281DRAFT_00211 at 228.350 kb on + strand, within H281DRAFT_00211 at 228.425 kb on + strand, within H281DRAFT_00211 at 228.560 kb on + strand, within H281DRAFT_00211 at 228.561 kb on - strand, within H281DRAFT_00211 at 228.671 kb on + strand, within H281DRAFT_00211 at 228.721 kb on + strand, within H281DRAFT_00211 at 228.722 kb on - strand, within H281DRAFT_00211 at 228.901 kb on - strand, within H281DRAFT_00211 at 228.977 kb on + strand, within H281DRAFT_00211 at 228.979 kb on + strand, within H281DRAFT_00211 at 229.073 kb on - strand, within H281DRAFT_00211 at 229.141 kb on + strand, within H281DRAFT_00211 at 229.141 kb on + strand, within H281DRAFT_00211 at 229.142 kb on - strand, within H281DRAFT_00211 at 229.142 kb on - strand, within H281DRAFT_00211 at 229.142 kb on - strand, within H281DRAFT_00211 at 229.142 kb on - strand, within H281DRAFT_00211 at 229.142 kb on - strand, within H281DRAFT_00211 at 229.173 kb on + strand, within H281DRAFT_00211 at 229.390 kb on + strand at 229.436 kb on - strand at 229.557 kb on + strand at 229.586 kb on + strand at 229.586 kb on + strand at 229.587 kb on - strand at 229.587 kb on - strand at 229.587 kb on - strand at 229.654 kb on + strand at 229.654 kb on + strand at 229.654 kb on + strand at 229.719 kb on - strand at 229.719 kb on - strand at 230.027 kb on - strand, within H281DRAFT_00212 at 230.236 kb on - strand, within H281DRAFT_00212 at 230.475 kb on - strand at 230.475 kb on - strand at 230.489 kb on + strand at 230.490 kb on - strand at 230.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 227,389 + H281DRAFT_00210 0.73 -0.7 227,389 + H281DRAFT_00210 0.73 -0.2 227,389 + H281DRAFT_00210 0.73 -1.8 227,392 - H281DRAFT_00210 0.74 +0.4 227,392 - H281DRAFT_00210 0.74 -0.3 227,513 + +0.7 227,514 - -0.6 227,726 + +0.3 227,769 + +0.6 227,770 - +1.1 227,770 - -1.0 227,838 - -0.2 227,858 - +0.7 227,862 + -1.1 227,863 - +0.2 228,032 + +0.4 228,032 + -1.3 228,032 + -0.9 228,032 + +0.7 228,032 + -0.9 228,033 - +0.9 228,033 - +0.6 228,033 - -0.7 228,246 - -1.4 228,260 + -0.3 228,260 + -0.2 228,260 + -0.2 228,261 - +0.7 228,262 + +0.7 228,263 - +0.1 228,263 - -0.2 228,263 - +0.4 228,263 - +0.5 228,263 - -0.6 228,263 - +2.0 228,263 - +1.3 228,313 + -0.0 228,313 + +0.7 228,314 - +0.4 228,338 + H281DRAFT_00211 0.11 -0.1 228,350 + H281DRAFT_00211 0.12 +1.5 228,425 + H281DRAFT_00211 0.18 -0.6 228,560 + H281DRAFT_00211 0.28 +2.0 228,561 - H281DRAFT_00211 0.28 -0.1 228,671 + H281DRAFT_00211 0.37 -2.4 228,721 + H281DRAFT_00211 0.40 +0.6 228,722 - H281DRAFT_00211 0.40 -1.0 228,901 - H281DRAFT_00211 0.54 +0.8 228,977 + H281DRAFT_00211 0.60 +1.0 228,979 + H281DRAFT_00211 0.60 +0.5 229,073 - H281DRAFT_00211 0.67 -0.5 229,141 + H281DRAFT_00211 0.72 +0.0 229,141 + H281DRAFT_00211 0.72 +0.5 229,142 - H281DRAFT_00211 0.72 +0.4 229,142 - H281DRAFT_00211 0.72 +0.2 229,142 - H281DRAFT_00211 0.72 +0.5 229,142 - H281DRAFT_00211 0.72 -0.2 229,142 - H281DRAFT_00211 0.72 +1.0 229,173 + H281DRAFT_00211 0.75 +0.4 229,390 + -0.1 229,436 - +0.0 229,557 + +0.6 229,586 + +0.1 229,586 + -0.7 229,587 - +0.1 229,587 - -0.4 229,587 - -0.0 229,654 + +0.9 229,654 + -0.1 229,654 + -0.4 229,719 - +0.1 229,719 - -1.1 230,027 - H281DRAFT_00212 0.39 +0.4 230,236 - H281DRAFT_00212 0.67 -1.0 230,475 - -1.4 230,475 - -0.8 230,489 + -0.0 230,490 - -0.4 230,490 - -0.1
Or see this region's nucleotide sequence