Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00163 and H281DRAFT_00164 overlap by 23 nucleotides H281DRAFT_00164 and H281DRAFT_00165 are separated by 49 nucleotides H281DRAFT_00165 and H281DRAFT_00166 are separated by 550 nucleotides
H281DRAFT_00163: H281DRAFT_00163 - glucokinase /transcriptional regulator, RpiR family, at 174,050 to 175,966
_00163
H281DRAFT_00164: H281DRAFT_00164 - 6-phosphogluconolactonase, at 175,944 to 176,690
_00164
H281DRAFT_00165: H281DRAFT_00165 - glucose-6-phosphate 1-dehydrogenase, at 176,740 to 178,203
_00165
H281DRAFT_00166: H281DRAFT_00166 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 178,754 to 180,001
_00166
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.789 kb on + strand at 175.790 kb on - strand at 175.825 kb on - strand at 175.945 kb on + strand at 175.945 kb on + strand at 175.946 kb on - strand at 175.946 kb on - strand at 175.946 kb on - strand at 175.961 kb on - strand at 176.207 kb on + strand, within H281DRAFT_00164 at 177.056 kb on + strand, within H281DRAFT_00165 at 177.534 kb on - strand, within H281DRAFT_00165 at 177.534 kb on - strand, within H281DRAFT_00165 at 177.677 kb on + strand, within H281DRAFT_00165 at 177.692 kb on + strand, within H281DRAFT_00165 at 177.693 kb on - strand, within H281DRAFT_00165 at 177.860 kb on + strand, within H281DRAFT_00165 at 178.038 kb on - strand, within H281DRAFT_00165 at 178.038 kb on - strand, within H281DRAFT_00165 at 178.038 kb on - strand, within H281DRAFT_00165 at 178.121 kb on + strand at 178.281 kb on - strand at 178.335 kb on - strand at 178.748 kb on + strand at 178.748 kb on + strand at 178.748 kb on + strand at 178.749 kb on - strand at 178.749 kb on - strand at 178.916 kb on + strand at 178.917 kb on - strand, within H281DRAFT_00166 at 179.144 kb on + strand, within H281DRAFT_00166 at 179.144 kb on + strand, within H281DRAFT_00166 at 179.186 kb on + strand, within H281DRAFT_00166 at 179.186 kb on + strand, within H281DRAFT_00166 at 179.186 kb on + strand, within H281DRAFT_00166 at 179.187 kb on - strand, within H281DRAFT_00166
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 175,789 + -0.5 175,790 - -1.2 175,825 - -1.1 175,945 + -0.7 175,945 + -1.0 175,946 - -1.1 175,946 - +0.4 175,946 - -1.8 175,961 - -0.7 176,207 + H281DRAFT_00164 0.35 +0.7 177,056 + H281DRAFT_00165 0.22 -0.8 177,534 - H281DRAFT_00165 0.54 +0.1 177,534 - H281DRAFT_00165 0.54 -1.3 177,677 + H281DRAFT_00165 0.64 +2.0 177,692 + H281DRAFT_00165 0.65 -1.2 177,693 - H281DRAFT_00165 0.65 -1.3 177,860 + H281DRAFT_00165 0.77 -2.7 178,038 - H281DRAFT_00165 0.89 -1.4 178,038 - H281DRAFT_00165 0.89 -2.5 178,038 - H281DRAFT_00165 0.89 -2.8 178,121 + -0.5 178,281 - -0.1 178,335 - +0.2 178,748 + +0.6 178,748 + +0.2 178,748 + +0.5 178,749 - -0.2 178,749 - -0.2 178,916 + -1.0 178,917 - H281DRAFT_00166 0.13 +1.5 179,144 + H281DRAFT_00166 0.31 +1.7 179,144 + H281DRAFT_00166 0.31 -0.5 179,186 + H281DRAFT_00166 0.35 -0.0 179,186 + H281DRAFT_00166 0.35 -0.6 179,186 + H281DRAFT_00166 0.35 +1.0 179,187 - H281DRAFT_00166 0.35 -0.9
Or see this region's nucleotide sequence