Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00118 and H281DRAFT_00119 are separated by 52 nucleotides H281DRAFT_00119 and H281DRAFT_00120 are separated by 82 nucleotides H281DRAFT_00120 and H281DRAFT_00121 are separated by 11 nucleotides
H281DRAFT_00118: H281DRAFT_00118 - sulfate adenylyltransferase subunit 1, at 125,666 to 126,979
_00118
H281DRAFT_00119: H281DRAFT_00119 - uroporphyrinogen-III C-methyltransferase, at 127,032 to 127,787
_00119
H281DRAFT_00120: H281DRAFT_00120 - sirohydrochlorin cobaltochelatase, at 127,870 to 128,250
_00120
H281DRAFT_00121: H281DRAFT_00121 - lipopolysaccharide export system permease protein, at 128,262 to 129,410
_00121
Position (kb) 127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 126.884 kb on + strand at 126.884 kb on + strand at 127.037 kb on + strand at 127.038 kb on - strand at 127.082 kb on + strand at 127.162 kb on - strand, within H281DRAFT_00119 at 127.360 kb on - strand, within H281DRAFT_00119 at 127.524 kb on + strand, within H281DRAFT_00119 at 127.525 kb on - strand, within H281DRAFT_00119 at 127.984 kb on + strand, within H281DRAFT_00120 at 128.007 kb on + strand, within H281DRAFT_00120 at 128.064 kb on + strand, within H281DRAFT_00120 at 128.064 kb on + strand, within H281DRAFT_00120 at 128.161 kb on + strand, within H281DRAFT_00120 at 128.162 kb on - strand, within H281DRAFT_00120 at 128.164 kb on + strand, within H281DRAFT_00120 at 128.264 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 126,884 + -3.3 126,884 + -2.7 127,037 + +0.1 127,038 - -0.4 127,082 + +0.7 127,162 - H281DRAFT_00119 0.17 -0.3 127,360 - H281DRAFT_00119 0.43 +0.7 127,524 + H281DRAFT_00119 0.65 -1.5 127,525 - H281DRAFT_00119 0.65 -1.2 127,984 + H281DRAFT_00120 0.30 -0.0 128,007 + H281DRAFT_00120 0.36 -0.5 128,064 + H281DRAFT_00120 0.51 -3.3 128,064 + H281DRAFT_00120 0.51 -3.3 128,161 + H281DRAFT_00120 0.76 -0.6 128,162 - H281DRAFT_00120 0.77 -2.6 128,164 + H281DRAFT_00120 0.77 -1.5 128,264 - +0.2
Or see this region's nucleotide sequence