Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00117 and H281DRAFT_00118 are separated by 20 nucleotides H281DRAFT_00118 and H281DRAFT_00119 are separated by 52 nucleotides H281DRAFT_00119 and H281DRAFT_00120 are separated by 82 nucleotides
H281DRAFT_00117: H281DRAFT_00117 - sulfate adenylyltransferase subunit 2, at 124,683 to 125,645
_00117
H281DRAFT_00118: H281DRAFT_00118 - sulfate adenylyltransferase subunit 1, at 125,666 to 126,979
_00118
H281DRAFT_00119: H281DRAFT_00119 - uroporphyrinogen-III C-methyltransferase, at 127,032 to 127,787
_00119
H281DRAFT_00120: H281DRAFT_00120 - sirohydrochlorin cobaltochelatase, at 127,870 to 128,250
_00120
Position (kb) 125
126
127 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 124.944 kb on + strand, within H281DRAFT_00117 at 125.247 kb on + strand, within H281DRAFT_00117 at 125.248 kb on - strand, within H281DRAFT_00117 at 125.248 kb on - strand, within H281DRAFT_00117 at 125.248 kb on - strand, within H281DRAFT_00117 at 125.326 kb on - strand, within H281DRAFT_00117 at 125.362 kb on - strand, within H281DRAFT_00117 at 125.362 kb on - strand, within H281DRAFT_00117 at 125.624 kb on + strand at 125.625 kb on - strand at 125.672 kb on - strand at 125.763 kb on - strand at 125.893 kb on + strand, within H281DRAFT_00118 at 125.893 kb on + strand, within H281DRAFT_00118 at 125.909 kb on + strand, within H281DRAFT_00118 at 125.915 kb on + strand, within H281DRAFT_00118 at 125.972 kb on + strand at 126.162 kb on - strand, within H281DRAFT_00118 at 126.197 kb on + strand, within H281DRAFT_00118 at 126.197 kb on + strand, within H281DRAFT_00118 at 126.622 kb on + strand, within H281DRAFT_00118 at 126.790 kb on + strand, within H281DRAFT_00118 at 126.791 kb on - strand, within H281DRAFT_00118 at 126.791 kb on - strand, within H281DRAFT_00118 at 126.884 kb on + strand at 126.884 kb on + strand at 127.037 kb on + strand at 127.038 kb on - strand at 127.082 kb on + strand at 127.162 kb on - strand, within H281DRAFT_00119 at 127.360 kb on - strand, within H281DRAFT_00119 at 127.524 kb on + strand, within H281DRAFT_00119 at 127.525 kb on - strand, within H281DRAFT_00119
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 124,944 + H281DRAFT_00117 0.27 -3.9 125,247 + H281DRAFT_00117 0.59 -3.0 125,248 - H281DRAFT_00117 0.59 -3.3 125,248 - H281DRAFT_00117 0.59 -3.7 125,248 - H281DRAFT_00117 0.59 -2.3 125,326 - H281DRAFT_00117 0.67 -2.5 125,362 - H281DRAFT_00117 0.71 -3.4 125,362 - H281DRAFT_00117 0.71 -2.4 125,624 + -3.9 125,625 - -2.7 125,672 - -1.4 125,763 - +1.0 125,893 + H281DRAFT_00118 0.17 -1.3 125,893 + H281DRAFT_00118 0.17 -1.6 125,909 + H281DRAFT_00118 0.18 -2.9 125,915 + H281DRAFT_00118 0.19 -3.1 125,972 + -0.6 126,162 - H281DRAFT_00118 0.38 -2.5 126,197 + H281DRAFT_00118 0.40 -3.3 126,197 + H281DRAFT_00118 0.40 +1.0 126,622 + H281DRAFT_00118 0.73 -1.0 126,790 + H281DRAFT_00118 0.86 +1.6 126,791 - H281DRAFT_00118 0.86 +1.0 126,791 - H281DRAFT_00118 0.86 -1.8 126,884 + -3.3 126,884 + -2.7 127,037 + +0.1 127,038 - -0.4 127,082 + +0.7 127,162 - H281DRAFT_00119 0.17 -0.3 127,360 - H281DRAFT_00119 0.43 +0.7 127,524 + H281DRAFT_00119 0.65 -1.5 127,525 - H281DRAFT_00119 0.65 -1.2
Or see this region's nucleotide sequence