Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3953

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3952 and Ac3H11_3953 are separated by 199 nucleotidesAc3H11_3953 and Ac3H11_3954 are separated by 34 nucleotides Ac3H11_3952 - Permease of the drug/metabolite transporter (DMT) superfamily, at 175,967 to 176,896 _3952 Ac3H11_3953 - D-galactarate dehydratase (EC 4.2.1.42), at 177,096 to 178,673 _3953 Ac3H11_3954 - hypothetical protein, not 6-phosphogluconolactonase, at 178,708 to 179,739 _3954 Position (kb) 177 178 179Strain fitness (log2 ratio) -1 0 1 2at 176.196 kb on + strand, within Ac3H11_3952at 176.197 kb on - strand, within Ac3H11_3952at 176.344 kb on - strand, within Ac3H11_3952at 176.509 kb on - strand, within Ac3H11_3952at 176.509 kb on - strand, within Ac3H11_3952at 176.581 kb on + strand, within Ac3H11_3952at 176.582 kb on - strand, within Ac3H11_3952at 176.584 kb on - strand, within Ac3H11_3952at 176.598 kb on + strand, within Ac3H11_3952at 176.598 kb on + strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.620 kb on + strand, within Ac3H11_3952at 176.621 kb on - strand, within Ac3H11_3952at 176.621 kb on - strand, within Ac3H11_3952at 176.944 kb on - strandat 176.972 kb on + strandat 177.094 kb on + strandat 177.095 kb on - strandat 177.398 kb on + strand, within Ac3H11_3953at 177.398 kb on + strand, within Ac3H11_3953at 177.399 kb on - strand, within Ac3H11_3953at 177.433 kb on + strand, within Ac3H11_3953at 177.434 kb on - strand, within Ac3H11_3953at 177.434 kb on - strand, within Ac3H11_3953at 177.434 kb on - strand, within Ac3H11_3953at 177.591 kb on + strand, within Ac3H11_3953at 178.153 kb on + strand, within Ac3H11_3953at 178.154 kb on - strand, within Ac3H11_3953at 178.154 kb on - strand, within Ac3H11_3953at 178.154 kb on - strand, within Ac3H11_3953at 178.154 kb on - strand, within Ac3H11_3953at 178.154 kb on - strand, within Ac3H11_3953at 178.192 kb on + strand, within Ac3H11_3953at 178.331 kb on - strand, within Ac3H11_3953at 178.518 kb on + strandat 178.519 kb on - strandat 178.899 kb on + strand, within Ac3H11_3954at 178.900 kb on - strand, within Ac3H11_3954at 178.985 kb on + strand, within Ac3H11_3954at 178.986 kb on - strand, within Ac3H11_3954at 179.351 kb on + strand, within Ac3H11_3954at 179.351 kb on + strand, within Ac3H11_3954at 179.352 kb on - strand, within Ac3H11_3954at 179.352 kb on - strand, within Ac3H11_3954at 179.352 kb on - strand, within Ac3H11_3954at 179.352 kb on - strand, within Ac3H11_3954at 179.579 kb on + strand, within Ac3H11_3954at 179.580 kb on - strand, within Ac3H11_3954at 179.580 kb on - strand, within Ac3H11_3954

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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176,196 + Ac3H11_3952 0.25 -0.3
176,197 - Ac3H11_3952 0.25 -1.0
176,344 - Ac3H11_3952 0.41 +0.3
176,509 - Ac3H11_3952 0.58 +0.3
176,509 - Ac3H11_3952 0.58 -0.7
176,581 + Ac3H11_3952 0.66 -0.4
176,582 - Ac3H11_3952 0.66 +0.3
176,584 - Ac3H11_3952 0.66 +0.0
176,598 + Ac3H11_3952 0.68 -0.0
176,598 + Ac3H11_3952 0.68 +2.2
176,599 - Ac3H11_3952 0.68 +0.5
176,599 - Ac3H11_3952 0.68 -0.7
176,599 - Ac3H11_3952 0.68 -1.4
176,599 - Ac3H11_3952 0.68 -0.8
176,611 - Ac3H11_3952 0.69 +0.8
176,611 - Ac3H11_3952 0.69 -0.5
176,611 - Ac3H11_3952 0.69 -0.6
176,611 - Ac3H11_3952 0.69 +0.1
176,611 - Ac3H11_3952 0.69 +1.2
176,620 + Ac3H11_3952 0.70 +0.0
176,621 - Ac3H11_3952 0.70 -0.4
176,621 - Ac3H11_3952 0.70 +0.1
176,944 - +0.3
176,972 + +0.5
177,094 + -0.8
177,095 - -0.0
177,398 + Ac3H11_3953 0.19 -0.3
177,398 + Ac3H11_3953 0.19 +0.2
177,399 - Ac3H11_3953 0.19 +0.2
177,433 + Ac3H11_3953 0.21 +0.4
177,434 - Ac3H11_3953 0.21 -0.7
177,434 - Ac3H11_3953 0.21 +1.3
177,434 - Ac3H11_3953 0.21 -1.2
177,591 + Ac3H11_3953 0.31 +0.5
178,153 + Ac3H11_3953 0.67 -0.7
178,154 - Ac3H11_3953 0.67 +0.5
178,154 - Ac3H11_3953 0.67 -0.3
178,154 - Ac3H11_3953 0.67 -1.0
178,154 - Ac3H11_3953 0.67 +0.1
178,154 - Ac3H11_3953 0.67 +0.1
178,192 + Ac3H11_3953 0.69 -0.4
178,331 - Ac3H11_3953 0.78 -0.4
178,518 + +1.0
178,519 - +0.5
178,899 + Ac3H11_3954 0.19 -0.7
178,900 - Ac3H11_3954 0.19 +0.2
178,985 + Ac3H11_3954 0.27 -0.6
178,986 - Ac3H11_3954 0.27 -1.0
179,351 + Ac3H11_3954 0.62 -0.3
179,351 + Ac3H11_3954 0.62 -0.8
179,352 - Ac3H11_3954 0.62 -0.0
179,352 - Ac3H11_3954 0.62 +0.6
179,352 - Ac3H11_3954 0.62 -0.2
179,352 - Ac3H11_3954 0.62 -1.1
179,579 + Ac3H11_3954 0.84 -0.6
179,580 - Ac3H11_3954 0.84 +0.7
179,580 - Ac3H11_3954 0.84 +0.3

Or see this region's nucleotide sequence