Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3860

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3858 and Ac3H11_3859 are separated by 107 nucleotidesAc3H11_3859 and Ac3H11_3860 are separated by 219 nucleotidesAc3H11_3860 and Ac3H11_3861 are separated by 25 nucleotidesAc3H11_3861 and Ac3H11_3862 are separated by 180 nucleotides Ac3H11_3858 - Glutaredoxin 3 (Grx3), at 76,541 to 76,801 _3858 Ac3H11_3859 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 76,909 to 77,367 _3859 Ac3H11_3860 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 77,587 to 78,600 _3860 Ac3H11_3861 - possible long-chain N-acyl amino acid synthase, at 78,626 to 79,312 _3861 Ac3H11_3862 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 79,493 to 80,737 _3862 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2at 76.712 kb on + strand, within Ac3H11_3858at 76.712 kb on + strand, within Ac3H11_3858at 76.712 kb on + strand, within Ac3H11_3858at 76.712 kb on + strand, within Ac3H11_3858at 76.713 kb on - strand, within Ac3H11_3858at 76.713 kb on - strand, within Ac3H11_3858at 76.713 kb on - strand, within Ac3H11_3858at 76.713 kb on - strand, within Ac3H11_3858at 76.713 kb on - strand, within Ac3H11_3858at 76.713 kb on - strand, within Ac3H11_3858at 76.713 kb on - strand, within Ac3H11_3858at 76.713 kb on - strand, within Ac3H11_3858at 76.713 kb on - strand, within Ac3H11_3858at 76.822 kb on + strandat 76.822 kb on + strandat 76.822 kb on + strandat 76.822 kb on + strandat 76.822 kb on + strandat 77.311 kb on + strand, within Ac3H11_3859at 77.311 kb on + strand, within Ac3H11_3859at 77.311 kb on + strand, within Ac3H11_3859at 77.311 kb on + strand, within Ac3H11_3859at 77.311 kb on + strand, within Ac3H11_3859at 77.311 kb on + strand, within Ac3H11_3859at 77.311 kb on + strand, within Ac3H11_3859at 77.311 kb on + strand, within Ac3H11_3859at 77.311 kb on + strand, within Ac3H11_3859at 77.311 kb on + strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strandat 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.312 kb on - strand, within Ac3H11_3859at 77.313 kb on - strand, within Ac3H11_3859at 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.370 kb on + strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.371 kb on - strandat 77.424 kb on + strandat 77.568 kb on + strandat 77.569 kb on - strandat 77.572 kb on + strandat 77.573 kb on - strandat 77.734 kb on + strand, within Ac3H11_3860at 77.735 kb on - strand, within Ac3H11_3860at 77.963 kb on + strand, within Ac3H11_3860at 77.963 kb on + strand, within Ac3H11_3860at 77.963 kb on + strand, within Ac3H11_3860at 77.991 kb on - strand, within Ac3H11_3860at 78.127 kb on + strand, within Ac3H11_3860at 78.127 kb on + strand, within Ac3H11_3860at 78.128 kb on - strand, within Ac3H11_3860at 78.128 kb on - strand, within Ac3H11_3860at 78.128 kb on - strand, within Ac3H11_3860at 78.128 kb on - strand, within Ac3H11_3860at 78.451 kb on + strand, within Ac3H11_3860at 78.452 kb on - strand, within Ac3H11_3860at 78.452 kb on - strand, within Ac3H11_3860at 78.452 kb on - strand, within Ac3H11_3860at 78.452 kb on - strand, within Ac3H11_3860at 78.682 kb on - strandat 78.687 kb on + strandat 78.688 kb on - strandat 78.710 kb on + strand, within Ac3H11_3861at 78.710 kb on + strand, within Ac3H11_3861at 78.711 kb on - strand, within Ac3H11_3861at 78.711 kb on - strand, within Ac3H11_3861at 78.847 kb on - strand, within Ac3H11_3861at 79.029 kb on + strand, within Ac3H11_3861at 79.029 kb on + strand, within Ac3H11_3861at 79.029 kb on + strand, within Ac3H11_3861at 79.029 kb on + strand, within Ac3H11_3861at 79.029 kb on + strand, within Ac3H11_3861at 79.029 kb on + strand, within Ac3H11_3861at 79.030 kb on - strand, within Ac3H11_3861at 79.030 kb on - strand, within Ac3H11_3861at 79.030 kb on - strand, within Ac3H11_3861at 79.030 kb on - strand, within Ac3H11_3861at 79.030 kb on - strand, within Ac3H11_3861at 79.030 kb on - strand, within Ac3H11_3861at 79.030 kb on - strand, within Ac3H11_3861at 79.030 kb on - strand, within Ac3H11_3861at 79.030 kb on - strand, within Ac3H11_3861at 79.030 kb on - strand, within Ac3H11_3861at 79.039 kb on - strand, within Ac3H11_3861at 79.039 kb on - strand, within Ac3H11_3861at 79.060 kb on - strand, within Ac3H11_3861at 79.060 kb on - strand, within Ac3H11_3861at 79.060 kb on - strand, within Ac3H11_3861at 79.060 kb on - strand, within Ac3H11_3861at 79.164 kb on + strand, within Ac3H11_3861at 79.164 kb on + strand, within Ac3H11_3861at 79.164 kb on + strand, within Ac3H11_3861at 79.165 kb on - strand, within Ac3H11_3861at 79.165 kb on - strand, within Ac3H11_3861at 79.165 kb on - strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.179 kb on + strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.180 kb on - strand, within Ac3H11_3861at 79.263 kb on + strandat 79.263 kb on + strandat 79.263 kb on + strandat 79.264 kb on - strandat 79.264 kb on - strandat 79.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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76,712 + Ac3H11_3858 0.66 +0.3
76,712 + Ac3H11_3858 0.66 -0.9
76,712 + Ac3H11_3858 0.66 -0.4
76,712 + Ac3H11_3858 0.66 -0.9
76,713 - Ac3H11_3858 0.66 +0.0
76,713 - Ac3H11_3858 0.66 -0.6
76,713 - Ac3H11_3858 0.66 -0.5
76,713 - Ac3H11_3858 0.66 -0.4
76,713 - Ac3H11_3858 0.66 -0.4
76,713 - Ac3H11_3858 0.66 -0.3
76,713 - Ac3H11_3858 0.66 +0.0
76,713 - Ac3H11_3858 0.66 -0.2
76,713 - Ac3H11_3858 0.66 -0.5
76,822 + -0.3
76,822 + -0.4
76,822 + -0.1
76,822 + -0.7
76,822 + -0.5
77,311 + Ac3H11_3859 0.88 -0.8
77,311 + Ac3H11_3859 0.88 -0.1
77,311 + Ac3H11_3859 0.88 -0.2
77,311 + Ac3H11_3859 0.88 -1.1
77,311 + Ac3H11_3859 0.88 +2.0
77,311 + Ac3H11_3859 0.88 -0.4
77,311 + Ac3H11_3859 0.88 +0.3
77,311 + Ac3H11_3859 0.88 -0.1
77,311 + Ac3H11_3859 0.88 +0.4
77,311 + Ac3H11_3859 0.88 +0.4
77,312 - Ac3H11_3859 0.88 +0.2
77,312 - +2.0
77,312 - Ac3H11_3859 0.88 -2.7
77,312 - Ac3H11_3859 0.88 -0.3
77,312 - Ac3H11_3859 0.88 +0.3
77,312 - Ac3H11_3859 0.88 -0.6
77,312 - Ac3H11_3859 0.88 -1.2
77,312 - Ac3H11_3859 0.88 +0.3
77,312 - Ac3H11_3859 0.88 -0.4
77,312 - Ac3H11_3859 0.88 +0.7
77,312 - Ac3H11_3859 0.88 +0.2
77,312 - Ac3H11_3859 0.88 +1.0
77,312 - Ac3H11_3859 0.88 +0.3
77,312 - Ac3H11_3859 0.88 -0.3
77,313 - Ac3H11_3859 0.88 -0.0
77,370 + +0.2
77,370 + +0.5
77,370 + +0.1
77,370 + -0.3
77,370 + +0.5
77,370 + -0.1
77,370 + +0.4
77,370 + +0.5
77,370 + -0.3
77,370 + -0.5
77,370 + +0.7
77,370 + +0.6
77,370 + -0.7
77,370 + -2.0
77,370 + +0.3
77,370 + +0.3
77,370 + -0.5
77,370 + +0.4
77,370 + -0.2
77,370 + -0.3
77,370 + +0.1
77,370 + +0.8
77,370 + +0.2
77,370 + -0.0
77,370 + +0.8
77,370 + +0.7
77,371 - +0.1
77,371 - +0.2
77,371 - +0.5
77,371 - +0.4
77,371 - -0.8
77,371 - +0.3
77,371 - +0.2
77,371 - -0.1
77,371 - +0.6
77,371 - -0.2
77,371 - +1.4
77,371 - +0.8
77,371 - +0.0
77,371 - +0.2
77,371 - -0.0
77,371 - -0.6
77,371 - -0.1
77,371 - +0.2
77,371 - -0.0
77,371 - -0.3
77,371 - -0.7
77,371 - -0.2
77,371 - +0.2
77,371 - -0.2
77,424 + +0.6
77,568 + +1.8
77,569 - -0.4
77,572 + -0.6
77,573 - +0.1
77,734 + Ac3H11_3860 0.14 +0.6
77,735 - Ac3H11_3860 0.15 +0.7
77,963 + Ac3H11_3860 0.37 -0.7
77,963 + Ac3H11_3860 0.37 -0.0
77,963 + Ac3H11_3860 0.37 +1.2
77,991 - Ac3H11_3860 0.40 -0.8
78,127 + Ac3H11_3860 0.53 +0.2
78,127 + Ac3H11_3860 0.53 -0.3
78,128 - Ac3H11_3860 0.53 +0.2
78,128 - Ac3H11_3860 0.53 +1.5
78,128 - Ac3H11_3860 0.53 -0.0
78,128 - Ac3H11_3860 0.53 -0.2
78,451 + Ac3H11_3860 0.85 +0.5
78,452 - Ac3H11_3860 0.85 -0.1
78,452 - Ac3H11_3860 0.85 +0.1
78,452 - Ac3H11_3860 0.85 +0.5
78,452 - Ac3H11_3860 0.85 -0.7
78,682 - +0.3
78,687 + +0.5
78,688 - +0.4
78,710 + Ac3H11_3861 0.12 +0.0
78,710 + Ac3H11_3861 0.12 +0.0
78,711 - Ac3H11_3861 0.12 +2.6
78,711 - Ac3H11_3861 0.12 +0.5
78,847 - Ac3H11_3861 0.32 -0.1
79,029 + Ac3H11_3861 0.59 -0.2
79,029 + Ac3H11_3861 0.59 -0.5
79,029 + Ac3H11_3861 0.59 -0.3
79,029 + Ac3H11_3861 0.59 -0.2
79,029 + Ac3H11_3861 0.59 -0.1
79,029 + Ac3H11_3861 0.59 -0.4
79,030 - Ac3H11_3861 0.59 +0.2
79,030 - Ac3H11_3861 0.59 +0.3
79,030 - Ac3H11_3861 0.59 -1.5
79,030 - Ac3H11_3861 0.59 -2.1
79,030 - Ac3H11_3861 0.59 +0.0
79,030 - Ac3H11_3861 0.59 -0.7
79,030 - Ac3H11_3861 0.59 +0.7
79,030 - Ac3H11_3861 0.59 +0.1
79,030 - Ac3H11_3861 0.59 -0.6
79,030 - Ac3H11_3861 0.59 +0.8
79,039 - Ac3H11_3861 0.60 +0.1
79,039 - Ac3H11_3861 0.60 -0.1
79,060 - Ac3H11_3861 0.63 +1.1
79,060 - Ac3H11_3861 0.63 +0.7
79,060 - Ac3H11_3861 0.63 -0.6
79,060 - Ac3H11_3861 0.63 +0.3
79,164 + Ac3H11_3861 0.78 +0.1
79,164 + Ac3H11_3861 0.78 -0.7
79,164 + Ac3H11_3861 0.78 +0.9
79,165 - Ac3H11_3861 0.78 +0.3
79,165 - Ac3H11_3861 0.78 -0.4
79,165 - Ac3H11_3861 0.78 -0.5
79,179 + Ac3H11_3861 0.80 +0.2
79,179 + Ac3H11_3861 0.80 -0.9
79,179 + Ac3H11_3861 0.80 +0.1
79,179 + Ac3H11_3861 0.80 +0.2
79,179 + Ac3H11_3861 0.80 -0.6
79,179 + Ac3H11_3861 0.80 -0.2
79,179 + Ac3H11_3861 0.80 -0.5
79,179 + Ac3H11_3861 0.80 -0.9
79,179 + Ac3H11_3861 0.80 +0.4
79,179 + Ac3H11_3861 0.80 -0.6
79,179 + Ac3H11_3861 0.80 -1.2
79,179 + Ac3H11_3861 0.80 -0.1
79,179 + Ac3H11_3861 0.80 -0.7
79,179 + Ac3H11_3861 0.80 +0.6
79,179 + Ac3H11_3861 0.80 -1.0
79,179 + Ac3H11_3861 0.80 -0.0
79,179 + Ac3H11_3861 0.80 +0.3
79,180 - Ac3H11_3861 0.81 -0.7
79,180 - Ac3H11_3861 0.81 -0.2
79,180 - Ac3H11_3861 0.81 -0.7
79,180 - Ac3H11_3861 0.81 -0.2
79,180 - Ac3H11_3861 0.81 -0.7
79,180 - Ac3H11_3861 0.81 -1.2
79,180 - Ac3H11_3861 0.81 -0.3
79,180 - Ac3H11_3861 0.81 -0.3
79,180 - Ac3H11_3861 0.81 +0.0
79,180 - Ac3H11_3861 0.81 +0.3
79,180 - Ac3H11_3861 0.81 +0.9
79,180 - Ac3H11_3861 0.81 +0.1
79,180 - Ac3H11_3861 0.81 +0.3
79,180 - Ac3H11_3861 0.81 +0.4
79,180 - Ac3H11_3861 0.81 -0.2
79,180 - Ac3H11_3861 0.81 -0.1
79,180 - Ac3H11_3861 0.81 +0.1
79,263 + -0.4
79,263 + -0.2
79,263 + -1.0
79,264 - -0.5
79,264 - -0.6
79,383 - +1.3

Or see this region's nucleotide sequence