Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2760

Experiment: LB 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_2759 and Ac3H11_2760 are separated by 247 nucleotidesAc3H11_2760 and Ac3H11_2761 are separated by 3 nucleotides Ac3H11_2759 - probable oxidoreductase, at 1,059,138 to 1,060,019 _2759 Ac3H11_2760 - putative exported protein, at 1,060,267 to 1,061,136 _2760 Ac3H11_2761 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 1,061,140 to 1,062,777 _2761 Position (kb) 1060 1061 1062Strain fitness (log2 ratio) -1 0 1at 1059.276 kb on + strand, within Ac3H11_2759at 1059.276 kb on + strand, within Ac3H11_2759at 1059.276 kb on + strand, within Ac3H11_2759at 1059.276 kb on + strand, within Ac3H11_2759at 1059.276 kb on + strand, within Ac3H11_2759at 1059.277 kb on - strandat 1059.277 kb on - strand, within Ac3H11_2759at 1059.277 kb on - strand, within Ac3H11_2759at 1059.277 kb on - strand, within Ac3H11_2759at 1059.277 kb on - strand, within Ac3H11_2759at 1059.288 kb on + strand, within Ac3H11_2759at 1059.288 kb on + strand, within Ac3H11_2759at 1059.291 kb on + strand, within Ac3H11_2759at 1059.291 kb on + strand, within Ac3H11_2759at 1059.405 kb on + strand, within Ac3H11_2759at 1059.405 kb on + strand, within Ac3H11_2759at 1059.406 kb on - strand, within Ac3H11_2759at 1059.435 kb on + strand, within Ac3H11_2759at 1059.501 kb on + strand, within Ac3H11_2759at 1059.502 kb on - strand, within Ac3H11_2759at 1059.502 kb on - strand, within Ac3H11_2759at 1059.585 kb on + strand, within Ac3H11_2759at 1059.586 kb on - strand, within Ac3H11_2759at 1059.910 kb on - strand, within Ac3H11_2759at 1060.273 kb on + strandat 1060.274 kb on - strandat 1060.274 kb on - strandat 1060.309 kb on + strandat 1060.363 kb on + strand, within Ac3H11_2760at 1060.363 kb on + strand, within Ac3H11_2760at 1060.477 kb on + strand, within Ac3H11_2760at 1060.477 kb on + strand, within Ac3H11_2760at 1060.477 kb on + strand, within Ac3H11_2760at 1060.478 kb on - strand, within Ac3H11_2760at 1060.478 kb on - strand, within Ac3H11_2760at 1060.543 kb on + strand, within Ac3H11_2760at 1060.543 kb on + strand, within Ac3H11_2760at 1060.543 kb on + strand, within Ac3H11_2760at 1060.543 kb on + strand, within Ac3H11_2760at 1060.543 kb on + strand, within Ac3H11_2760at 1060.544 kb on - strand, within Ac3H11_2760at 1060.544 kb on - strand, within Ac3H11_2760at 1060.544 kb on - strand, within Ac3H11_2760at 1060.544 kb on - strand, within Ac3H11_2760at 1060.544 kb on - strand, within Ac3H11_2760at 1060.544 kb on - strand, within Ac3H11_2760at 1060.634 kb on - strand, within Ac3H11_2760at 1060.714 kb on + strand, within Ac3H11_2760at 1060.714 kb on + strand, within Ac3H11_2760at 1060.715 kb on - strand, within Ac3H11_2760at 1060.766 kb on - strand, within Ac3H11_2760at 1060.766 kb on - strand, within Ac3H11_2760at 1060.789 kb on + strand, within Ac3H11_2760at 1060.928 kb on - strand, within Ac3H11_2760at 1061.019 kb on + strand, within Ac3H11_2760at 1061.134 kb on + strandat 1061.134 kb on + strandat 1061.175 kb on + strandat 1061.175 kb on + strandat 1061.176 kb on - strandat 1061.197 kb on + strandat 1061.197 kb on + strandat 1061.426 kb on + strand, within Ac3H11_2761at 1061.426 kb on + strand, within Ac3H11_2761at 1061.426 kb on + strand, within Ac3H11_2761at 1061.427 kb on - strand, within Ac3H11_2761at 1061.427 kb on - strand, within Ac3H11_2761at 1061.427 kb on - strand, within Ac3H11_2761at 1061.479 kb on + strand, within Ac3H11_2761at 1061.479 kb on + strand, within Ac3H11_2761at 1061.603 kb on + strand, within Ac3H11_2761at 1061.603 kb on + strand, within Ac3H11_2761at 1061.690 kb on - strand, within Ac3H11_2761at 1061.690 kb on - strand, within Ac3H11_2761at 1061.690 kb on - strand, within Ac3H11_2761at 1061.690 kb on - strand, within Ac3H11_2761at 1061.783 kb on - strand, within Ac3H11_2761at 1061.783 kb on - strand, within Ac3H11_2761at 1061.843 kb on - strand, within Ac3H11_2761at 1062.029 kb on - strand, within Ac3H11_2761at 1062.130 kb on + strand, within Ac3H11_2761at 1062.130 kb on + strand, within Ac3H11_2761at 1062.131 kb on - strand, within Ac3H11_2761at 1062.131 kb on - strand, within Ac3H11_2761at 1062.131 kb on - strand, within Ac3H11_2761at 1062.133 kb on + strand, within Ac3H11_2761at 1062.133 kb on + strand, within Ac3H11_2761at 1062.133 kb on + strand, within Ac3H11_2761at 1062.133 kb on + strand, within Ac3H11_2761at 1062.133 kb on + strand, within Ac3H11_2761at 1062.134 kb on - strand, within Ac3H11_2761at 1062.134 kb on - strand, within Ac3H11_2761

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
remove
1,059,276 + Ac3H11_2759 0.16 +0.8
1,059,276 + Ac3H11_2759 0.16 -1.1
1,059,276 + Ac3H11_2759 0.16 +0.4
1,059,276 + Ac3H11_2759 0.16 +0.6
1,059,276 + Ac3H11_2759 0.16 +0.0
1,059,277 - +0.7
1,059,277 - Ac3H11_2759 0.16 -0.6
1,059,277 - Ac3H11_2759 0.16 -0.6
1,059,277 - Ac3H11_2759 0.16 -0.7
1,059,277 - Ac3H11_2759 0.16 +0.2
1,059,288 + Ac3H11_2759 0.17 +0.1
1,059,288 + Ac3H11_2759 0.17 +0.3
1,059,291 + Ac3H11_2759 0.17 +0.8
1,059,291 + Ac3H11_2759 0.17 +0.6
1,059,405 + Ac3H11_2759 0.30 -0.7
1,059,405 + Ac3H11_2759 0.30 -0.1
1,059,406 - Ac3H11_2759 0.30 -0.5
1,059,435 + Ac3H11_2759 0.34 -0.2
1,059,501 + Ac3H11_2759 0.41 +1.4
1,059,502 - Ac3H11_2759 0.41 -0.0
1,059,502 - Ac3H11_2759 0.41 +0.8
1,059,585 + Ac3H11_2759 0.51 -0.2
1,059,586 - Ac3H11_2759 0.51 +0.3
1,059,910 - Ac3H11_2759 0.88 +0.2
1,060,273 + -1.0
1,060,274 - +0.2
1,060,274 - -0.7
1,060,309 + +0.2
1,060,363 + Ac3H11_2760 0.11 -0.4
1,060,363 + Ac3H11_2760 0.11 -0.5
1,060,477 + Ac3H11_2760 0.24 -0.4
1,060,477 + Ac3H11_2760 0.24 +0.2
1,060,477 + Ac3H11_2760 0.24 -0.5
1,060,478 - Ac3H11_2760 0.24 +0.3
1,060,478 - Ac3H11_2760 0.24 -0.0
1,060,543 + Ac3H11_2760 0.32 +0.7
1,060,543 + Ac3H11_2760 0.32 +1.6
1,060,543 + Ac3H11_2760 0.32 +0.1
1,060,543 + Ac3H11_2760 0.32 +0.2
1,060,543 + Ac3H11_2760 0.32 -1.2
1,060,544 - Ac3H11_2760 0.32 -0.6
1,060,544 - Ac3H11_2760 0.32 +0.4
1,060,544 - Ac3H11_2760 0.32 -0.3
1,060,544 - Ac3H11_2760 0.32 -0.6
1,060,544 - Ac3H11_2760 0.32 -0.9
1,060,544 - Ac3H11_2760 0.32 -1.2
1,060,634 - Ac3H11_2760 0.42 +0.0
1,060,714 + Ac3H11_2760 0.51 +0.5
1,060,714 + Ac3H11_2760 0.51 -0.9
1,060,715 - Ac3H11_2760 0.51 -0.7
1,060,766 - Ac3H11_2760 0.57 -0.0
1,060,766 - Ac3H11_2760 0.57 -0.9
1,060,789 + Ac3H11_2760 0.60 -1.0
1,060,928 - Ac3H11_2760 0.76 -0.4
1,061,019 + Ac3H11_2760 0.86 -0.2
1,061,134 + +0.3
1,061,134 + +0.3
1,061,175 + -0.0
1,061,175 + +1.1
1,061,176 - +0.3
1,061,197 + +0.1
1,061,197 + -1.6
1,061,426 + Ac3H11_2761 0.17 -0.6
1,061,426 + Ac3H11_2761 0.17 +0.1
1,061,426 + Ac3H11_2761 0.17 -0.2
1,061,427 - Ac3H11_2761 0.18 +0.0
1,061,427 - Ac3H11_2761 0.18 +0.0
1,061,427 - Ac3H11_2761 0.18 -0.8
1,061,479 + Ac3H11_2761 0.21 +0.1
1,061,479 + Ac3H11_2761 0.21 -0.1
1,061,603 + Ac3H11_2761 0.28 -0.8
1,061,603 + Ac3H11_2761 0.28 -1.1
1,061,690 - Ac3H11_2761 0.34 -0.1
1,061,690 - Ac3H11_2761 0.34 -0.4
1,061,690 - Ac3H11_2761 0.34 -0.7
1,061,690 - Ac3H11_2761 0.34 +0.0
1,061,783 - Ac3H11_2761 0.39 -0.3
1,061,783 - Ac3H11_2761 0.39 -0.6
1,061,843 - Ac3H11_2761 0.43 -1.4
1,062,029 - Ac3H11_2761 0.54 -0.9
1,062,130 + Ac3H11_2761 0.60 -0.7
1,062,130 + Ac3H11_2761 0.60 -0.5
1,062,131 - Ac3H11_2761 0.61 +0.3
1,062,131 - Ac3H11_2761 0.61 +0.2
1,062,131 - Ac3H11_2761 0.61 -0.4
1,062,133 + Ac3H11_2761 0.61 -0.3
1,062,133 + Ac3H11_2761 0.61 +0.9
1,062,133 + Ac3H11_2761 0.61 -0.4
1,062,133 + Ac3H11_2761 0.61 +0.5
1,062,133 + Ac3H11_2761 0.61 -0.3
1,062,134 - Ac3H11_2761 0.61 +1.1
1,062,134 - Ac3H11_2761 0.61 -1.0

Or see this region's nucleotide sequence