Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2000

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1997 and Ac3H11_1998 are separated by 32 nucleotidesAc3H11_1998 and Ac3H11_1999 are separated by 84 nucleotidesAc3H11_1999 and Ac3H11_2000 overlap by 12 nucleotidesAc3H11_2000 and Ac3H11_2001 are separated by 125 nucleotides Ac3H11_1997 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 213,541 to 215,325 _1997 Ac3H11_1998 - Positive regulator of CheA protein activity (CheW), at 215,358 to 215,885 _1998 Ac3H11_1999 - hypothetical protein, at 215,970 to 216,140 _1999 Ac3H11_2000 - LSU m5C1962 methyltransferase RlmI, at 216,129 to 217,322 _2000 Ac3H11_2001 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 217,448 to 218,509 _2001 Position (kb) 216 217 218Strain fitness (log2 ratio) -2 -1 0 1 2at 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.379 kb on - strandat 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strandat 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.768 kb on - strand, within Ac3H11_1998at 215.925 kb on - strandat 216.316 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.606 kb on - strand, within Ac3H11_2000at 216.711 kb on + strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.750 kb on + strand, within Ac3H11_2000at 216.751 kb on - strand, within Ac3H11_2000at 216.751 kb on - strand, within Ac3H11_2000at 216.795 kb on + strand, within Ac3H11_2000at 216.796 kb on - strand, within Ac3H11_2000at 216.796 kb on - strand, within Ac3H11_2000at 217.080 kb on + strand, within Ac3H11_2000at 217.080 kb on + strand, within Ac3H11_2000at 217.080 kb on + strand, within Ac3H11_2000at 217.080 kb on + strand, within Ac3H11_2000at 217.080 kb on + strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.081 kb on - strand, within Ac3H11_2000at 217.221 kb on + strandat 217.221 kb on + strandat 217.221 kb on + strandat 217.221 kb on + strandat 217.221 kb on + strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.287 kb on + strandat 217.287 kb on + strandat 217.287 kb on + strandat 217.359 kb on + strandat 217.360 kb on - strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.422 kb on + strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.423 kb on - strandat 217.447 kb on + strandat 217.447 kb on + strandat 217.447 kb on + strandat 217.447 kb on + strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.448 kb on - strandat 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.811 kb on + strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 217.812 kb on - strand, within Ac3H11_2001at 218.235 kb on - strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.300 kb on + strand, within Ac3H11_2001at 218.301 kb on - strand, within Ac3H11_2001at 218.301 kb on - strand, within Ac3H11_2001at 218.321 kb on + strand, within Ac3H11_2001at 218.321 kb on + strand, within Ac3H11_2001at 218.322 kb on - strand, within Ac3H11_2001at 218.322 kb on - strand, within Ac3H11_2001

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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215,378 + -0.8
215,378 + +0.9
215,378 + -0.0
215,378 + +0.2
215,378 + +0.8
215,378 + +0.3
215,378 + +0.1
215,378 + -0.0
215,379 - -0.5
215,574 + Ac3H11_1998 0.41 +0.6
215,574 + Ac3H11_1998 0.41 -2.0
215,574 + Ac3H11_1998 0.41 -0.2
215,574 + Ac3H11_1998 0.41 +0.2
215,574 + +1.1
215,574 + Ac3H11_1998 0.41 -0.6
215,574 + Ac3H11_1998 0.41 +1.1
215,574 + Ac3H11_1998 0.41 -0.4
215,574 + Ac3H11_1998 0.41 -0.0
215,574 + Ac3H11_1998 0.41 +0.3
215,574 + Ac3H11_1998 0.41 +0.5
215,575 - Ac3H11_1998 0.41 -0.1
215,575 - Ac3H11_1998 0.41 +0.2
215,575 - Ac3H11_1998 0.41 +0.8
215,575 - Ac3H11_1998 0.41 +0.2
215,575 - Ac3H11_1998 0.41 +0.3
215,575 - Ac3H11_1998 0.41 +0.2
215,575 - Ac3H11_1998 0.41 -0.0
215,576 + Ac3H11_1998 0.41 +2.1
215,576 + Ac3H11_1998 0.41 -1.1
215,576 + Ac3H11_1998 0.41 +0.1
215,576 + Ac3H11_1998 0.41 +0.6
215,576 + Ac3H11_1998 0.41 -0.4
215,576 + Ac3H11_1998 0.41 -0.4
215,576 + Ac3H11_1998 0.41 -0.2
215,576 + Ac3H11_1998 0.41 +0.5
215,576 + Ac3H11_1998 0.41 +0.3
215,576 + Ac3H11_1998 0.41 +1.0
215,576 + Ac3H11_1998 0.41 +0.4
215,576 + Ac3H11_1998 0.41 +0.2
215,576 + Ac3H11_1998 0.41 +0.2
215,576 + Ac3H11_1998 0.41 -0.1
215,577 - Ac3H11_1998 0.41 -0.2
215,577 - Ac3H11_1998 0.41 +0.4
215,577 - Ac3H11_1998 0.41 -0.2
215,577 - Ac3H11_1998 0.41 -0.2
215,577 - Ac3H11_1998 0.41 +0.5
215,577 - Ac3H11_1998 0.41 +0.2
215,577 - Ac3H11_1998 0.41 -0.7
215,577 - Ac3H11_1998 0.41 +0.5
215,577 - Ac3H11_1998 0.41 +0.2
215,608 + Ac3H11_1998 0.47 -0.0
215,608 + Ac3H11_1998 0.47 -0.9
215,608 + Ac3H11_1998 0.47 -0.2
215,608 + Ac3H11_1998 0.47 -0.7
215,608 + Ac3H11_1998 0.47 +0.9
215,608 + Ac3H11_1998 0.47 -0.3
215,608 + Ac3H11_1998 0.47 +0.4
215,608 + Ac3H11_1998 0.47 +0.2
215,609 - Ac3H11_1998 0.48 +0.3
215,609 - Ac3H11_1998 0.48 -0.8
215,609 - Ac3H11_1998 0.48 -0.7
215,609 - Ac3H11_1998 0.48 -0.1
215,609 - Ac3H11_1998 0.48 +0.5
215,609 - Ac3H11_1998 0.48 +0.5
215,768 - Ac3H11_1998 0.78 -0.1
215,925 - -1.2
216,316 + Ac3H11_2000 0.16 +0.2
216,531 + Ac3H11_2000 0.34 +0.5
216,531 + Ac3H11_2000 0.34 -0.2
216,531 + Ac3H11_2000 0.34 -0.3
216,531 + Ac3H11_2000 0.34 -0.6
216,531 + Ac3H11_2000 0.34 -0.2
216,531 + Ac3H11_2000 0.34 +0.5
216,532 - Ac3H11_2000 0.34 -0.2
216,532 - Ac3H11_2000 0.34 +0.8
216,532 - Ac3H11_2000 0.34 -0.8
216,532 - Ac3H11_2000 0.34 +0.4
216,532 - Ac3H11_2000 0.34 +1.1
216,532 - Ac3H11_2000 0.34 +0.1
216,606 - Ac3H11_2000 0.40 -0.8
216,711 + Ac3H11_2000 0.49 -0.5
216,712 - Ac3H11_2000 0.49 +0.2
216,712 - Ac3H11_2000 0.49 +0.4
216,712 - Ac3H11_2000 0.49 +0.3
216,712 - Ac3H11_2000 0.49 -0.1
216,712 - Ac3H11_2000 0.49 +0.5
216,750 + Ac3H11_2000 0.52 +0.1
216,751 - Ac3H11_2000 0.52 -1.5
216,751 - Ac3H11_2000 0.52 +0.6
216,795 + Ac3H11_2000 0.56 +0.1
216,796 - Ac3H11_2000 0.56 -0.7
216,796 - Ac3H11_2000 0.56 -0.0
217,080 + Ac3H11_2000 0.80 +1.0
217,080 + Ac3H11_2000 0.80 +0.4
217,080 + Ac3H11_2000 0.80 +0.3
217,080 + Ac3H11_2000 0.80 -0.4
217,080 + Ac3H11_2000 0.80 -0.1
217,081 - Ac3H11_2000 0.80 +0.9
217,081 - Ac3H11_2000 0.80 -0.1
217,081 - Ac3H11_2000 0.80 -0.8
217,081 - Ac3H11_2000 0.80 -0.8
217,081 - Ac3H11_2000 0.80 -0.2
217,081 - Ac3H11_2000 0.80 -1.1
217,081 - Ac3H11_2000 0.80 +0.2
217,081 - Ac3H11_2000 0.80 +0.7
217,221 + -0.4
217,221 + +0.3
217,221 + -0.6
217,221 + -0.6
217,221 + +0.7
217,222 - -0.0
217,222 - -0.6
217,222 - -0.5
217,222 - +0.4
217,222 - -2.0
217,222 - -0.8
217,287 + +0.6
217,287 + +1.9
217,287 + +0.5
217,359 + -0.9
217,360 - -0.6
217,422 + +0.0
217,422 + -0.7
217,422 + +0.5
217,422 + -0.1
217,422 + +1.3
217,422 + -0.8
217,422 + -0.4
217,423 - +0.5
217,423 - -1.8
217,423 - +0.1
217,423 - -1.2
217,423 - -0.4
217,423 - -0.8
217,423 - -0.6
217,423 - -1.2
217,423 - -0.6
217,423 - -1.2
217,423 - +0.4
217,423 - -2.2
217,423 - -0.6
217,423 - -1.6
217,447 + +0.4
217,447 + -0.3
217,447 + +0.3
217,447 + +1.0
217,448 - +0.0
217,448 - -0.6
217,448 - -0.3
217,448 - -0.4
217,448 - -1.1
217,448 - +0.5
217,448 - +0.3
217,448 - +0.1
217,448 - +0.5
217,811 + Ac3H11_2001 0.34 +0.1
217,811 + Ac3H11_2001 0.34 -1.2
217,811 + Ac3H11_2001 0.34 +0.0
217,811 + Ac3H11_2001 0.34 -0.1
217,811 + Ac3H11_2001 0.34 -0.5
217,811 + Ac3H11_2001 0.34 +0.6
217,811 + Ac3H11_2001 0.34 -0.5
217,811 + Ac3H11_2001 0.34 -0.1
217,811 + Ac3H11_2001 0.34 -0.9
217,811 + Ac3H11_2001 0.34 +1.3
217,811 + Ac3H11_2001 0.34 -0.4
217,812 - Ac3H11_2001 0.34 -0.0
217,812 - Ac3H11_2001 0.34 -0.7
217,812 - Ac3H11_2001 0.34 +0.2
217,812 - Ac3H11_2001 0.34 +0.2
217,812 - Ac3H11_2001 0.34 +1.2
217,812 - Ac3H11_2001 0.34 -0.4
217,812 - Ac3H11_2001 0.34 -0.7
217,812 - Ac3H11_2001 0.34 -0.1
217,812 - Ac3H11_2001 0.34 -0.8
217,812 - Ac3H11_2001 0.34 -1.2
217,812 - Ac3H11_2001 0.34 -0.1
218,235 - Ac3H11_2001 0.74 -0.3
218,300 + Ac3H11_2001 0.80 +0.0
218,300 + Ac3H11_2001 0.80 +0.3
218,300 + Ac3H11_2001 0.80 +1.0
218,300 + Ac3H11_2001 0.80 +0.4
218,300 + Ac3H11_2001 0.80 -0.5
218,301 - Ac3H11_2001 0.80 -0.3
218,301 - Ac3H11_2001 0.80 -1.5
218,321 + Ac3H11_2001 0.82 -0.8
218,321 + Ac3H11_2001 0.82 +0.4
218,322 - Ac3H11_2001 0.82 -0.3
218,322 - Ac3H11_2001 0.82 +0.7

Or see this region's nucleotide sequence