Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27615

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27595 and AO353_27600 are separated by 3 nucleotidesAO353_27600 and AO353_27605 overlap by 1 nucleotidesAO353_27605 and AO353_27610 overlap by 4 nucleotidesAO353_27610 and AO353_27615 overlap by 4 nucleotidesAO353_27615 and AO353_27620 are separated by 88 nucleotides AO353_27595: AO353_27595 - sulfurtransferase, at 6,016,038 to 6,016,430 _27595 AO353_27600: AO353_27600 - sulfur relay protein TusC, at 6,016,434 to 6,016,796 _27600 AO353_27605: AO353_27605 - sulfur relay protein DsrH, at 6,016,796 to 6,017,095 _27605 AO353_27610: AO353_27610 - sulfur relay protein TusE, at 6,017,092 to 6,017,427 _27610 AO353_27615: AO353_27615 - hypothetical protein, at 6,017,424 to 6,018,425 _27615 AO353_27620: AO353_27620 - glutathionyl-hydroquinone reductase YqjG, at 6,018,514 to 6,019,515 _27620 Position (kb) 6017 6018 6019Strain fitness (log2 ratio) -2 -1 0 1 2at 6016.439 kb on + strandat 6016.439 kb on + strandat 6017.715 kb on + strand, within AO353_27615at 6017.715 kb on + strand, within AO353_27615at 6017.745 kb on + strand, within AO353_27615at 6017.746 kb on - strand, within AO353_27615at 6017.813 kb on + strand, within AO353_27615at 6017.813 kb on + strand, within AO353_27615at 6017.814 kb on - strand, within AO353_27615at 6017.814 kb on - strand, within AO353_27615at 6017.829 kb on + strand, within AO353_27615at 6017.829 kb on + strand, within AO353_27615at 6017.830 kb on - strand, within AO353_27615at 6017.830 kb on - strand, within AO353_27615at 6017.830 kb on - strand, within AO353_27615at 6017.830 kb on - strand, within AO353_27615at 6018.029 kb on - strand, within AO353_27615at 6018.177 kb on + strand, within AO353_27615at 6018.178 kb on - strand, within AO353_27615at 6018.178 kb on - strand, within AO353_27615at 6018.475 kb on + strandat 6018.475 kb on + strandat 6018.475 kb on + strandat 6018.476 kb on - strandat 6018.553 kb on + strandat 6018.682 kb on + strand, within AO353_27620at 6018.682 kb on + strand, within AO353_27620at 6018.682 kb on + strand, within AO353_27620at 6018.682 kb on + strand, within AO353_27620at 6018.682 kb on + strand, within AO353_27620at 6018.682 kb on + strand, within AO353_27620at 6018.682 kb on + strand, within AO353_27620at 6018.683 kb on - strand, within AO353_27620at 6018.683 kb on - strand, within AO353_27620at 6018.683 kb on - strand, within AO353_27620at 6018.683 kb on - strand, within AO353_27620at 6018.683 kb on - strand, within AO353_27620at 6018.866 kb on - strand, within AO353_27620at 6018.866 kb on - strand, within AO353_27620at 6018.886 kb on + strand, within AO353_27620at 6019.032 kb on - strand, within AO353_27620at 6019.032 kb on - strand, within AO353_27620at 6019.090 kb on + strand, within AO353_27620at 6019.091 kb on - strand, within AO353_27620at 6019.123 kb on + strand, within AO353_27620at 6019.123 kb on + strand, within AO353_27620at 6019.123 kb on + strand, within AO353_27620at 6019.123 kb on + strand, within AO353_27620at 6019.124 kb on - strand, within AO353_27620at 6019.124 kb on - strand, within AO353_27620at 6019.124 kb on - strand, within AO353_27620at 6019.124 kb on - strand, within AO353_27620at 6019.193 kb on - strand, within AO353_27620at 6019.207 kb on + strand, within AO353_27620at 6019.207 kb on + strand, within AO353_27620at 6019.207 kb on + strand, within AO353_27620at 6019.208 kb on - strand, within AO353_27620at 6019.208 kb on - strand, within AO353_27620at 6019.208 kb on - strand, within AO353_27620at 6019.208 kb on - strand, within AO353_27620at 6019.208 kb on - strand, within AO353_27620at 6019.208 kb on - strand, within AO353_27620at 6019.264 kb on + strand, within AO353_27620at 6019.264 kb on + strand, within AO353_27620at 6019.264 kb on + strand, within AO353_27620at 6019.265 kb on - strand, within AO353_27620at 6019.265 kb on - strand, within AO353_27620at 6019.265 kb on - strand, within AO353_27620at 6019.267 kb on + strand, within AO353_27620at 6019.267 kb on + strand, within AO353_27620at 6019.268 kb on - strand, within AO353_27620at 6019.268 kb on - strand, within AO353_27620at 6019.268 kb on - strand, within AO353_27620at 6019.339 kb on + strand, within AO353_27620at 6019.339 kb on + strand, within AO353_27620at 6019.339 kb on + strand, within AO353_27620at 6019.340 kb on - strand, within AO353_27620at 6019.368 kb on - strand, within AO353_27620at 6019.393 kb on + strand, within AO353_27620at 6019.393 kb on + strand, within AO353_27620at 6019.393 kb on + strand, within AO353_27620at 6019.394 kb on - strand, within AO353_27620at 6019.394 kb on - strand, within AO353_27620at 6019.394 kb on - strand, within AO353_27620at 6019.394 kb on - strand, within AO353_27620at 6019.397 kb on - strand, within AO353_27620

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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6,016,439 + -0.3
6,016,439 + -1.2
6,017,715 + AO353_27615 0.29 +0.7
6,017,715 + AO353_27615 0.29 -0.0
6,017,745 + AO353_27615 0.32 -1.4
6,017,746 - AO353_27615 0.32 -0.1
6,017,813 + AO353_27615 0.39 +2.0
6,017,813 + AO353_27615 0.39 -0.0
6,017,814 - AO353_27615 0.39 -1.7
6,017,814 - AO353_27615 0.39 -0.9
6,017,829 + AO353_27615 0.40 +1.5
6,017,829 + AO353_27615 0.40 +0.2
6,017,830 - AO353_27615 0.41 +0.9
6,017,830 - AO353_27615 0.41 -0.0
6,017,830 - AO353_27615 0.41 +0.7
6,017,830 - AO353_27615 0.41 +0.7
6,018,029 - AO353_27615 0.60 -1.1
6,018,177 + AO353_27615 0.75 -0.2
6,018,178 - AO353_27615 0.75 -0.3
6,018,178 - AO353_27615 0.75 +1.3
6,018,475 + +1.7
6,018,475 + -1.6
6,018,475 + +0.7
6,018,476 - -0.6
6,018,553 + -1.0
6,018,682 + AO353_27620 0.17 +0.5
6,018,682 + AO353_27620 0.17 -0.1
6,018,682 + AO353_27620 0.17 -0.2
6,018,682 + AO353_27620 0.17 -1.9
6,018,682 + AO353_27620 0.17 -1.1
6,018,682 + AO353_27620 0.17 -0.1
6,018,682 + AO353_27620 0.17 -0.4
6,018,683 - AO353_27620 0.17 +1.7
6,018,683 - AO353_27620 0.17 -1.5
6,018,683 - AO353_27620 0.17 -0.6
6,018,683 - AO353_27620 0.17 +1.0
6,018,683 - AO353_27620 0.17 +0.9
6,018,866 - AO353_27620 0.35 +0.1
6,018,866 - AO353_27620 0.35 +0.9
6,018,886 + AO353_27620 0.37 +0.2
6,019,032 - AO353_27620 0.52 +0.1
6,019,032 - AO353_27620 0.52 -0.5
6,019,090 + AO353_27620 0.57 +0.8
6,019,091 - AO353_27620 0.58 -0.1
6,019,123 + AO353_27620 0.61 -0.9
6,019,123 + AO353_27620 0.61 +1.5
6,019,123 + AO353_27620 0.61 -0.1
6,019,123 + AO353_27620 0.61 -0.9
6,019,124 - AO353_27620 0.61 -0.7
6,019,124 - AO353_27620 0.61 -1.5
6,019,124 - AO353_27620 0.61 +0.1
6,019,124 - AO353_27620 0.61 -1.2
6,019,193 - AO353_27620 0.68 -0.3
6,019,207 + AO353_27620 0.69 -0.9
6,019,207 + AO353_27620 0.69 +0.1
6,019,207 + AO353_27620 0.69 +0.2
6,019,208 - AO353_27620 0.69 -0.2
6,019,208 - AO353_27620 0.69 +1.4
6,019,208 - AO353_27620 0.69 -0.3
6,019,208 - AO353_27620 0.69 -0.9
6,019,208 - AO353_27620 0.69 +0.0
6,019,208 - AO353_27620 0.69 -0.3
6,019,264 + AO353_27620 0.75 +1.0
6,019,264 + AO353_27620 0.75 -0.4
6,019,264 + AO353_27620 0.75 -1.1
6,019,265 - AO353_27620 0.75 +0.9
6,019,265 - AO353_27620 0.75 -0.7
6,019,265 - AO353_27620 0.75 +0.1
6,019,267 + AO353_27620 0.75 -0.9
6,019,267 + AO353_27620 0.75 -1.1
6,019,268 - AO353_27620 0.75 -0.6
6,019,268 - AO353_27620 0.75 +0.1
6,019,268 - AO353_27620 0.75 +0.3
6,019,339 + AO353_27620 0.82 +0.7
6,019,339 + AO353_27620 0.82 -0.0
6,019,339 + AO353_27620 0.82 +0.1
6,019,340 - AO353_27620 0.82 +1.4
6,019,368 - AO353_27620 0.85 +1.4
6,019,393 + AO353_27620 0.88 -0.4
6,019,393 + AO353_27620 0.88 -1.1
6,019,393 + AO353_27620 0.88 +0.3
6,019,394 - AO353_27620 0.88 +0.8
6,019,394 - AO353_27620 0.88 -0.3
6,019,394 - AO353_27620 0.88 -0.1
6,019,394 - AO353_27620 0.88 -0.9
6,019,397 - AO353_27620 0.88 -0.9

Or see this region's nucleotide sequence