Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27250

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27240 and AO353_27245 are separated by 150 nucleotidesAO353_27245 and AO353_27250 overlap by 19 nucleotidesAO353_27250 and AO353_27255 are separated by 48 nucleotides AO353_27240: AO353_27240 - restriction endonuclease subunit M, at 5,958,744 to 5,959,538 _27240 AO353_27245: AO353_27245 - lysozyme, at 5,959,689 to 5,960,234 _27245 AO353_27250: AO353_27250 - glycoside hydrolase family 19, at 5,960,216 to 5,960,875 _27250 AO353_27255: AO353_27255 - late control protein, at 5,960,924 to 5,961,970 _27255 Position (kb) 5960 5961Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5959.420 kb on + strand, within AO353_27240at 5959.420 kb on + strand, within AO353_27240at 5959.420 kb on + strand, within AO353_27240at 5959.420 kb on + strand, within AO353_27240at 5959.421 kb on - strand, within AO353_27240at 5959.421 kb on - strand, within AO353_27240at 5959.453 kb on + strand, within AO353_27240at 5959.453 kb on + strand, within AO353_27240at 5959.453 kb on + strand, within AO353_27240at 5959.453 kb on + strand, within AO353_27240at 5959.453 kb on + strand, within AO353_27240at 5959.454 kb on - strand, within AO353_27240at 5959.454 kb on - strand, within AO353_27240at 5959.532 kb on + strandat 5959.532 kb on + strandat 5959.532 kb on + strandat 5959.532 kb on + strandat 5959.532 kb on + strandat 5959.532 kb on + strandat 5959.533 kb on - strandat 5959.533 kb on - strandat 5959.533 kb on - strandat 5959.538 kb on + strandat 5959.538 kb on + strandat 5959.538 kb on + strandat 5959.538 kb on + strandat 5959.538 kb on + strandat 5959.538 kb on + strandat 5959.538 kb on + strandat 5959.538 kb on + strandat 5959.539 kb on - strandat 5959.539 kb on - strandat 5959.559 kb on + strandat 5959.717 kb on + strandat 5959.717 kb on + strandat 5959.717 kb on + strandat 5959.718 kb on - strandat 5959.718 kb on - strandat 5959.894 kb on - strand, within AO353_27245at 5959.975 kb on + strand, within AO353_27245at 5959.975 kb on + strand, within AO353_27245at 5959.975 kb on + strand, within AO353_27245at 5959.975 kb on + strand, within AO353_27245at 5959.976 kb on - strand, within AO353_27245at 5959.976 kb on - strand, within AO353_27245at 5959.998 kb on + strand, within AO353_27245at 5960.109 kb on + strand, within AO353_27245at 5960.109 kb on + strand, within AO353_27245at 5960.109 kb on + strand, within AO353_27245at 5960.110 kb on - strand, within AO353_27245at 5960.110 kb on - strand, within AO353_27245at 5960.110 kb on - strand, within AO353_27245at 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.234 kb on + strandat 5960.235 kb on - strandat 5960.235 kb on - strandat 5960.235 kb on - strandat 5960.235 kb on - strandat 5960.235 kb on - strandat 5960.235 kb on - strandat 5960.235 kb on - strandat 5960.235 kb on - strandat 5960.235 kb on - strandat 5960.364 kb on + strand, within AO353_27250at 5960.587 kb on - strand, within AO353_27250at 5960.587 kb on - strand, within AO353_27250at 5960.587 kb on - strand, within AO353_27250at 5960.587 kb on - strandat 5960.618 kb on + strand, within AO353_27250at 5960.618 kb on + strand, within AO353_27250at 5960.618 kb on + strand, within AO353_27250at 5960.649 kb on + strand, within AO353_27250at 5960.649 kb on + strand, within AO353_27250at 5960.649 kb on + strand, within AO353_27250at 5960.650 kb on - strand, within AO353_27250at 5960.650 kb on - strand, within AO353_27250at 5960.650 kb on - strand, within AO353_27250at 5960.685 kb on + strand, within AO353_27250at 5960.685 kb on + strand, within AO353_27250at 5960.686 kb on - strand, within AO353_27250at 5960.686 kb on - strand, within AO353_27250at 5960.688 kb on + strand, within AO353_27250at 5960.689 kb on - strand, within AO353_27250at 5960.689 kb on - strand, within AO353_27250at 5960.875 kb on + strandat 5960.875 kb on + strandat 5960.875 kb on + strandat 5960.875 kb on + strandat 5960.875 kb on + strandat 5960.875 kb on + strandat 5960.876 kb on - strandat 5960.876 kb on - strandat 5960.876 kb on - strandat 5960.876 kb on - strandat 5960.876 kb on - strandat 5960.876 kb on - strandat 5960.890 kb on + strandat 5960.891 kb on - strandat 5960.926 kb on - strandat 5961.069 kb on + strand, within AO353_27255at 5961.069 kb on + strand, within AO353_27255at 5961.069 kb on + strand, within AO353_27255at 5961.070 kb on - strand, within AO353_27255at 5961.070 kb on - strand, within AO353_27255at 5961.070 kb on - strand, within AO353_27255at 5961.106 kb on + strand, within AO353_27255at 5961.233 kb on - strand, within AO353_27255at 5961.233 kb on - strand, within AO353_27255at 5961.233 kb on - strand, within AO353_27255at 5961.233 kb on - strand, within AO353_27255at 5961.496 kb on - strand, within AO353_27255at 5961.524 kb on - strand, within AO353_27255at 5961.595 kb on + strand, within AO353_27255at 5961.789 kb on + strand, within AO353_27255at 5961.790 kb on - strand, within AO353_27255

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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5,959,420 + AO353_27240 0.85 -1.5
5,959,420 + AO353_27240 0.85 -0.9
5,959,420 + AO353_27240 0.85 +0.3
5,959,420 + AO353_27240 0.85 -0.3
5,959,421 - AO353_27240 0.85 -0.5
5,959,421 - AO353_27240 0.85 -0.2
5,959,453 + AO353_27240 0.89 +0.3
5,959,453 + AO353_27240 0.89 -0.6
5,959,453 + AO353_27240 0.89 -0.3
5,959,453 + AO353_27240 0.89 -0.3
5,959,453 + AO353_27240 0.89 -1.1
5,959,454 - AO353_27240 0.89 -0.4
5,959,454 - AO353_27240 0.89 +0.1
5,959,532 + +1.3
5,959,532 + -0.4
5,959,532 + +1.7
5,959,532 + -0.9
5,959,532 + +0.1
5,959,532 + -0.8
5,959,533 - -0.9
5,959,533 - +0.7
5,959,533 - -0.7
5,959,538 + +0.2
5,959,538 + -0.1
5,959,538 + +1.0
5,959,538 + +0.5
5,959,538 + +0.7
5,959,538 + +0.5
5,959,538 + -1.9
5,959,538 + +0.1
5,959,539 - -1.9
5,959,539 - -2.1
5,959,559 + +0.6
5,959,717 + +0.7
5,959,717 + -0.0
5,959,717 + +0.1
5,959,718 - -0.1
5,959,718 - -0.8
5,959,894 - AO353_27245 0.38 -0.9
5,959,975 + AO353_27245 0.52 +1.0
5,959,975 + AO353_27245 0.52 +0.6
5,959,975 + AO353_27245 0.52 -0.4
5,959,975 + AO353_27245 0.52 +0.0
5,959,976 - AO353_27245 0.53 -0.1
5,959,976 - AO353_27245 0.53 -1.3
5,959,998 + AO353_27245 0.57 -0.3
5,960,109 + AO353_27245 0.77 -0.1
5,960,109 + AO353_27245 0.77 +0.5
5,960,109 + AO353_27245 0.77 +0.8
5,960,110 - AO353_27245 0.77 +0.0
5,960,110 - AO353_27245 0.77 -0.0
5,960,110 - AO353_27245 0.77 -1.7
5,960,234 + -0.4
5,960,234 + -3.1
5,960,234 + +1.4
5,960,234 + +1.3
5,960,234 + +0.3
5,960,234 + +0.1
5,960,234 + +0.9
5,960,234 + -0.3
5,960,234 + +0.1
5,960,234 + +1.1
5,960,234 + +0.7
5,960,234 + +2.7
5,960,234 + -0.9
5,960,234 + +1.5
5,960,235 - +0.7
5,960,235 - +0.7
5,960,235 - +1.9
5,960,235 - -0.9
5,960,235 - +0.1
5,960,235 - -1.3
5,960,235 - -1.3
5,960,235 - +0.7
5,960,235 - -1.4
5,960,364 + AO353_27250 0.22 +1.8
5,960,587 - AO353_27250 0.56 +0.3
5,960,587 - AO353_27250 0.56 -0.4
5,960,587 - AO353_27250 0.56 +0.5
5,960,587 - -0.3
5,960,618 + AO353_27250 0.61 -1.7
5,960,618 + AO353_27250 0.61 -0.5
5,960,618 + AO353_27250 0.61 -0.6
5,960,649 + AO353_27250 0.66 -1.0
5,960,649 + AO353_27250 0.66 +0.3
5,960,649 + AO353_27250 0.66 +0.9
5,960,650 - AO353_27250 0.66 -0.1
5,960,650 - AO353_27250 0.66 +0.2
5,960,650 - AO353_27250 0.66 +0.7
5,960,685 + AO353_27250 0.71 +0.3
5,960,685 + AO353_27250 0.71 +0.3
5,960,686 - AO353_27250 0.71 -0.1
5,960,686 - AO353_27250 0.71 +0.1
5,960,688 + AO353_27250 0.72 +1.1
5,960,689 - AO353_27250 0.72 +0.1
5,960,689 - AO353_27250 0.72 -0.5
5,960,875 + +0.3
5,960,875 + -1.3
5,960,875 + +1.1
5,960,875 + +0.7
5,960,875 + +2.0
5,960,875 + +0.8
5,960,876 - +0.7
5,960,876 - +0.7
5,960,876 - +0.0
5,960,876 - -1.4
5,960,876 - -0.1
5,960,876 - +1.5
5,960,890 + +1.7
5,960,891 - -1.3
5,960,926 - +2.3
5,961,069 + AO353_27255 0.14 -0.3
5,961,069 + AO353_27255 0.14 +0.2
5,961,069 + AO353_27255 0.14 +0.7
5,961,070 - AO353_27255 0.14 +1.0
5,961,070 - AO353_27255 0.14 +0.4
5,961,070 - AO353_27255 0.14 -0.3
5,961,106 + AO353_27255 0.17 +1.1
5,961,233 - AO353_27255 0.30 -0.9
5,961,233 - AO353_27255 0.30 +0.5
5,961,233 - AO353_27255 0.30 -0.6
5,961,233 - AO353_27255 0.30 -1.0
5,961,496 - AO353_27255 0.55 +3.3
5,961,524 - AO353_27255 0.57 -0.4
5,961,595 + AO353_27255 0.64 -2.0
5,961,789 + AO353_27255 0.83 +0.7
5,961,790 - AO353_27255 0.83 +1.6

Or see this region's nucleotide sequence