Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19170

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19160 and AO353_19165 overlap by 4 nucleotidesAO353_19165 and AO353_19170 overlap by 17 nucleotidesAO353_19170 and AO353_19175 are separated by 166 nucleotides AO353_19160: AO353_19160 - glutathione peroxidase, at 4,202,458 to 4,202,943 _19160 AO353_19165: AO353_19165 - MarR family transcriptional regulator, at 4,202,940 to 4,203,401 _19165 AO353_19170: AO353_19170 - histidine kinase, at 4,203,385 to 4,205,712 _19170 AO353_19175: AO353_19175 - AAA family ATPase, at 4,205,879 to 4,206,769 _19175 Position (kb) 4203 4204 4205 4206Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4202.478 kb on + strandat 4202.478 kb on + strandat 4202.478 kb on + strandat 4202.479 kb on - strandat 4202.479 kb on - strandat 4202.479 kb on - strandat 4202.541 kb on - strandat 4202.562 kb on + strand, within AO353_19160at 4202.562 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.585 kb on - strand, within AO353_19160at 4202.585 kb on - strand, within AO353_19160at 4202.614 kb on + strand, within AO353_19160at 4202.665 kb on - strand, within AO353_19160at 4202.810 kb on + strand, within AO353_19160at 4202.811 kb on - strand, within AO353_19160at 4202.811 kb on - strand, within AO353_19160at 4202.997 kb on + strand, within AO353_19165at 4202.997 kb on + strand, within AO353_19165at 4202.997 kb on + strand, within AO353_19165at 4203.027 kb on + strand, within AO353_19165at 4203.027 kb on + strand, within AO353_19165at 4203.027 kb on + strand, within AO353_19165at 4203.028 kb on - strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.030 kb on - strand, within AO353_19165at 4203.060 kb on + strand, within AO353_19165at 4203.069 kb on + strand, within AO353_19165at 4203.069 kb on + strand, within AO353_19165at 4203.069 kb on + strand, within AO353_19165at 4203.069 kb on + strand, within AO353_19165at 4203.070 kb on - strand, within AO353_19165at 4203.070 kb on - strand, within AO353_19165at 4203.070 kb on - strand, within AO353_19165at 4203.088 kb on + strand, within AO353_19165at 4203.089 kb on - strand, within AO353_19165at 4203.199 kb on + strand, within AO353_19165at 4203.199 kb on + strand, within AO353_19165at 4203.199 kb on + strand, within AO353_19165at 4203.199 kb on + strand, within AO353_19165at 4203.199 kb on + strand, within AO353_19165at 4203.200 kb on - strand, within AO353_19165at 4203.200 kb on - strand, within AO353_19165at 4203.200 kb on - strand, within AO353_19165at 4203.200 kb on - strand, within AO353_19165at 4203.462 kb on - strandat 4203.536 kb on - strandat 4203.536 kb on - strandat 4203.621 kb on + strand, within AO353_19170at 4203.621 kb on + strand, within AO353_19170at 4203.716 kb on - strand, within AO353_19170at 4203.835 kb on + strand, within AO353_19170at 4203.835 kb on + strand, within AO353_19170at 4203.835 kb on + strand, within AO353_19170at 4203.835 kb on + strand, within AO353_19170at 4203.835 kb on + strand, within AO353_19170at 4203.836 kb on - strand, within AO353_19170at 4203.836 kb on - strand, within AO353_19170at 4203.836 kb on - strand, within AO353_19170at 4203.836 kb on - strand, within AO353_19170at 4203.845 kb on + strand, within AO353_19170at 4203.845 kb on + strand, within AO353_19170at 4203.845 kb on + strand, within AO353_19170at 4203.846 kb on - strand, within AO353_19170at 4203.846 kb on - strand, within AO353_19170at 4203.846 kb on - strand, within AO353_19170at 4203.970 kb on + strand, within AO353_19170at 4203.971 kb on - strand, within AO353_19170at 4203.971 kb on - strand, within AO353_19170at 4204.055 kb on + strand, within AO353_19170at 4204.056 kb on - strand, within AO353_19170at 4204.130 kb on - strand, within AO353_19170at 4204.453 kb on - strand, within AO353_19170at 4204.453 kb on - strand, within AO353_19170at 4204.672 kb on - strand, within AO353_19170at 4204.672 kb on - strand, within AO353_19170at 4204.905 kb on + strand, within AO353_19170at 4204.906 kb on - strand, within AO353_19170at 4204.944 kb on + strand, within AO353_19170at 4204.944 kb on + strand, within AO353_19170at 4204.945 kb on - strand, within AO353_19170at 4205.171 kb on + strand, within AO353_19170at 4205.171 kb on + strand, within AO353_19170at 4205.172 kb on - strand, within AO353_19170at 4205.172 kb on - strand, within AO353_19170at 4205.172 kb on - strand, within AO353_19170at 4205.270 kb on + strand, within AO353_19170at 4205.270 kb on + strand, within AO353_19170at 4205.270 kb on + strand, within AO353_19170at 4205.270 kb on + strand, within AO353_19170at 4205.270 kb on + strand, within AO353_19170at 4205.270 kb on + strand, within AO353_19170at 4205.271 kb on - strand, within AO353_19170at 4205.271 kb on - strand, within AO353_19170at 4205.271 kb on - strand, within AO353_19170at 4205.271 kb on - strand, within AO353_19170at 4205.271 kb on - strand, within AO353_19170at 4205.271 kb on - strandat 4205.271 kb on - strand, within AO353_19170at 4205.271 kb on - strand, within AO353_19170at 4205.271 kb on - strand, within AO353_19170at 4205.385 kb on - strand, within AO353_19170at 4205.430 kb on + strand, within AO353_19170at 4205.430 kb on + strand, within AO353_19170at 4205.430 kb on + strand, within AO353_19170at 4205.430 kb on + strand, within AO353_19170at 4205.430 kb on + strand, within AO353_19170at 4205.431 kb on - strand, within AO353_19170at 4205.431 kb on - strand, within AO353_19170at 4205.440 kb on - strand, within AO353_19170at 4205.522 kb on + strandat 4205.522 kb on + strandat 4205.522 kb on + strandat 4205.523 kb on - strandat 4205.569 kb on + strandat 4205.569 kb on + strandat 4205.569 kb on + strandat 4205.569 kb on + strandat 4205.570 kb on - strandat 4205.603 kb on + strandat 4205.604 kb on - strandat 4205.604 kb on - strandat 4205.614 kb on + strandat 4205.614 kb on + strandat 4205.615 kb on - strandat 4205.615 kb on - strandat 4205.615 kb on - strandat 4205.615 kb on - strandat 4205.665 kb on - strandat 4205.682 kb on - strandat 4205.682 kb on - strandat 4205.682 kb on - strandat 4205.682 kb on - strandat 4205.753 kb on + strandat 4205.754 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.819 kb on - strandat 4205.853 kb on - strandat 4205.853 kb on - strandat 4205.853 kb on - strandat 4205.853 kb on - strandat 4205.853 kb on - strandat 4205.853 kb on - strandat 4205.932 kb on + strandat 4205.933 kb on - strandat 4205.933 kb on - strandat 4206.172 kb on + strand, within AO353_19175at 4206.173 kb on - strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.561 kb on - strand, within AO353_19175at 4206.561 kb on - strand, within AO353_19175at 4206.568 kb on + strand, within AO353_19175at 4206.568 kb on + strand, within AO353_19175at 4206.569 kb on - strand, within AO353_19175

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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4,202,478 + -1.0
4,202,478 + -1.0
4,202,478 + +0.1
4,202,479 - -0.1
4,202,479 - -0.3
4,202,479 - +2.3
4,202,541 - +0.1
4,202,562 + AO353_19160 0.21 -1.1
4,202,562 + AO353_19160 0.21 -0.9
4,202,584 + AO353_19160 0.26 -1.5
4,202,584 + AO353_19160 0.26 -1.5
4,202,584 + AO353_19160 0.26 -1.5
4,202,584 + AO353_19160 0.26 -0.7
4,202,584 + AO353_19160 0.26 -0.1
4,202,584 + AO353_19160 0.26 +0.1
4,202,584 + AO353_19160 0.26 -0.2
4,202,585 - AO353_19160 0.26 +1.7
4,202,585 - AO353_19160 0.26 +0.8
4,202,614 + AO353_19160 0.32 +0.7
4,202,665 - AO353_19160 0.43 -0.3
4,202,810 + AO353_19160 0.72 -0.3
4,202,811 - AO353_19160 0.73 -0.9
4,202,811 - AO353_19160 0.73 +0.5
4,202,997 + AO353_19165 0.12 +0.3
4,202,997 + AO353_19165 0.12 -0.5
4,202,997 + AO353_19165 0.12 -1.2
4,203,027 + AO353_19165 0.19 -1.0
4,203,027 + AO353_19165 0.19 -0.5
4,203,027 + AO353_19165 0.19 +0.7
4,203,028 - AO353_19165 0.19 -1.0
4,203,029 + AO353_19165 0.19 +0.3
4,203,029 + AO353_19165 0.19 -1.8
4,203,029 + AO353_19165 0.19 +0.0
4,203,029 + AO353_19165 0.19 -0.5
4,203,029 + AO353_19165 0.19 -1.7
4,203,029 + AO353_19165 0.19 +0.3
4,203,029 + AO353_19165 0.19 -0.3
4,203,029 + AO353_19165 0.19 -0.5
4,203,029 + AO353_19165 0.19 +0.1
4,203,029 + AO353_19165 0.19 +2.1
4,203,030 - AO353_19165 0.19 +0.9
4,203,060 + AO353_19165 0.26 -0.4
4,203,069 + AO353_19165 0.28 -1.0
4,203,069 + AO353_19165 0.28 -0.2
4,203,069 + AO353_19165 0.28 -1.0
4,203,069 + AO353_19165 0.28 -0.3
4,203,070 - AO353_19165 0.28 +1.7
4,203,070 - AO353_19165 0.28 +0.7
4,203,070 - AO353_19165 0.28 +0.4
4,203,088 + AO353_19165 0.32 +1.0
4,203,089 - AO353_19165 0.32 +2.1
4,203,199 + AO353_19165 0.56 +0.6
4,203,199 + AO353_19165 0.56 +1.1
4,203,199 + AO353_19165 0.56 +0.1
4,203,199 + AO353_19165 0.56 +0.7
4,203,199 + AO353_19165 0.56 -0.0
4,203,200 - AO353_19165 0.56 -0.1
4,203,200 - AO353_19165 0.56 -0.3
4,203,200 - AO353_19165 0.56 -0.0
4,203,200 - AO353_19165 0.56 -0.9
4,203,462 - -1.3
4,203,536 - -0.3
4,203,536 - -1.7
4,203,621 + AO353_19170 0.10 +1.0
4,203,621 + AO353_19170 0.10 +1.1
4,203,716 - AO353_19170 0.14 -1.1
4,203,835 + AO353_19170 0.19 -1.0
4,203,835 + AO353_19170 0.19 -1.9
4,203,835 + AO353_19170 0.19 -1.1
4,203,835 + AO353_19170 0.19 +0.2
4,203,835 + AO353_19170 0.19 -1.1
4,203,836 - AO353_19170 0.19 -1.1
4,203,836 - AO353_19170 0.19 +0.1
4,203,836 - AO353_19170 0.19 -0.7
4,203,836 - AO353_19170 0.19 -0.1
4,203,845 + AO353_19170 0.20 -2.2
4,203,845 + AO353_19170 0.20 -1.5
4,203,845 + AO353_19170 0.20 -0.9
4,203,846 - AO353_19170 0.20 +0.9
4,203,846 - AO353_19170 0.20 +0.2
4,203,846 - AO353_19170 0.20 +0.1
4,203,970 + AO353_19170 0.25 -1.7
4,203,971 - AO353_19170 0.25 +0.2
4,203,971 - AO353_19170 0.25 +0.3
4,204,055 + AO353_19170 0.29 -1.3
4,204,056 - AO353_19170 0.29 +0.1
4,204,130 - AO353_19170 0.32 -0.8
4,204,453 - AO353_19170 0.46 +0.1
4,204,453 - AO353_19170 0.46 +0.1
4,204,672 - AO353_19170 0.55 -0.5
4,204,672 - AO353_19170 0.55 -0.6
4,204,905 + AO353_19170 0.65 -0.5
4,204,906 - AO353_19170 0.65 +0.1
4,204,944 + AO353_19170 0.67 -0.3
4,204,944 + AO353_19170 0.67 -0.5
4,204,945 - AO353_19170 0.67 -1.2
4,205,171 + AO353_19170 0.77 -0.5
4,205,171 + AO353_19170 0.77 -2.6
4,205,172 - AO353_19170 0.77 +0.0
4,205,172 - AO353_19170 0.77 -1.4
4,205,172 - AO353_19170 0.77 +0.4
4,205,270 + AO353_19170 0.81 -0.1
4,205,270 + AO353_19170 0.81 -1.2
4,205,270 + AO353_19170 0.81 -0.8
4,205,270 + AO353_19170 0.81 +0.4
4,205,270 + AO353_19170 0.81 -1.9
4,205,270 + AO353_19170 0.81 -1.9
4,205,271 - AO353_19170 0.81 -0.8
4,205,271 - AO353_19170 0.81 +0.3
4,205,271 - AO353_19170 0.81 -0.4
4,205,271 - AO353_19170 0.81 -1.3
4,205,271 - AO353_19170 0.81 -0.8
4,205,271 - +1.1
4,205,271 - AO353_19170 0.81 -2.1
4,205,271 - AO353_19170 0.81 -0.7
4,205,271 - AO353_19170 0.81 +1.2
4,205,385 - AO353_19170 0.86 +0.7
4,205,430 + AO353_19170 0.88 +1.1
4,205,430 + AO353_19170 0.88 -1.7
4,205,430 + AO353_19170 0.88 +0.7
4,205,430 + AO353_19170 0.88 -1.3
4,205,430 + AO353_19170 0.88 +0.4
4,205,431 - AO353_19170 0.88 -0.8
4,205,431 - AO353_19170 0.88 -1.3
4,205,440 - AO353_19170 0.88 -1.4
4,205,522 + -1.3
4,205,522 + +0.4
4,205,522 + -1.5
4,205,523 - -1.7
4,205,569 + -1.0
4,205,569 + -1.1
4,205,569 + -1.0
4,205,569 + -1.5
4,205,570 - -1.1
4,205,603 + +0.9
4,205,604 - -0.3
4,205,604 - -0.8
4,205,614 + -0.4
4,205,614 + +1.7
4,205,615 - +0.8
4,205,615 - -2.1
4,205,615 - -0.8
4,205,615 - -1.6
4,205,665 - -0.0
4,205,682 - -0.4
4,205,682 - -0.0
4,205,682 - -0.9
4,205,682 - -1.0
4,205,753 + -0.5
4,205,754 - +0.7
4,205,770 - +1.3
4,205,770 - +2.2
4,205,770 - +3.3
4,205,770 - +1.4
4,205,770 - +3.2
4,205,770 - +3.6
4,205,770 - +2.2
4,205,819 - +1.7
4,205,853 - +2.3
4,205,853 - +2.4
4,205,853 - +1.3
4,205,853 - +2.9
4,205,853 - +2.3
4,205,853 - +2.1
4,205,932 + -1.1
4,205,933 - +0.9
4,205,933 - +1.8
4,206,172 + AO353_19175 0.33 -1.1
4,206,173 - AO353_19175 0.33 +0.6
4,206,405 + AO353_19175 0.59 -1.5
4,206,405 + AO353_19175 0.59 +0.3
4,206,405 + AO353_19175 0.59 -1.0
4,206,405 + AO353_19175 0.59 -0.9
4,206,405 + AO353_19175 0.59 +0.1
4,206,405 + AO353_19175 0.59 +0.1
4,206,405 + AO353_19175 0.59 +0.2
4,206,405 + AO353_19175 0.59 -0.1
4,206,405 + AO353_19175 0.59 +0.2
4,206,405 + AO353_19175 0.59 -1.6
4,206,405 + AO353_19175 0.59 -0.3
4,206,405 + AO353_19175 0.59 -0.5
4,206,405 + AO353_19175 0.59 +0.7
4,206,406 - AO353_19175 0.59 +0.9
4,206,406 - AO353_19175 0.59 -0.1
4,206,406 - AO353_19175 0.59 +0.5
4,206,406 - AO353_19175 0.59 +1.2
4,206,406 - AO353_19175 0.59 -0.1
4,206,406 - AO353_19175 0.59 +0.7
4,206,406 - AO353_19175 0.59 +1.2
4,206,406 - AO353_19175 0.59 -1.9
4,206,406 - AO353_19175 0.59 -0.9
4,206,406 - AO353_19175 0.59 +0.6
4,206,406 - AO353_19175 0.59 +1.0
4,206,406 - AO353_19175 0.59 +1.1
4,206,406 - AO353_19175 0.59 +1.7
4,206,406 - AO353_19175 0.59 +0.9
4,206,413 + AO353_19175 0.60 -2.2
4,206,413 + AO353_19175 0.60 -1.5
4,206,413 + AO353_19175 0.60 +0.0
4,206,413 + AO353_19175 0.60 -1.0
4,206,413 + AO353_19175 0.60 +0.2
4,206,413 + AO353_19175 0.60 -0.5
4,206,413 + AO353_19175 0.60 +1.0
4,206,413 + AO353_19175 0.60 -0.1
4,206,413 + AO353_19175 0.60 -0.7
4,206,414 - AO353_19175 0.60 +0.9
4,206,414 - AO353_19175 0.60 -0.3
4,206,414 - AO353_19175 0.60 +0.1
4,206,414 - AO353_19175 0.60 +1.3
4,206,414 - AO353_19175 0.60 +1.2
4,206,414 - AO353_19175 0.60 +1.1
4,206,414 - AO353_19175 0.60 +0.3
4,206,414 - AO353_19175 0.60 +2.3
4,206,561 - AO353_19175 0.77 +0.3
4,206,561 - AO353_19175 0.77 +2.7
4,206,568 + AO353_19175 0.77 -0.5
4,206,568 + AO353_19175 0.77 +1.3
4,206,569 - AO353_19175 0.77 -0.3

Or see this region's nucleotide sequence