Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16855

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16850 and AO353_16855 are separated by 111 nucleotidesAO353_16855 and AO353_16860 are separated by 248 nucleotidesAO353_16860 and AO353_16865 are separated by 67 nucleotides AO353_16850: AO353_16850 - ferredoxin-NADP reductase, at 3,728,725 to 3,729,504 _16850 AO353_16855: AO353_16855 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA, at 3,729,616 to 3,730,314 _16855 AO353_16860: AO353_16860 - hypothetical protein, at 3,730,563 to 3,731,030 _16860 AO353_16865: AO353_16865 - RNA-binding protein, at 3,731,098 to 3,731,808 _16865 Position (kb) 3729 3730 3731Strain fitness (log2 ratio) -2 -1 0 1 2at 3728.634 kb on + strandat 3728.634 kb on + strandat 3728.649 kb on + strandat 3728.649 kb on + strandat 3728.649 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.680 kb on - strandat 3729.680 kb on - strandat 3729.680 kb on - strandat 3729.680 kb on - strandat 3729.707 kb on + strand, within AO353_16855at 3729.708 kb on - strand, within AO353_16855at 3729.810 kb on + strand, within AO353_16855at 3729.810 kb on + strand, within AO353_16855at 3729.811 kb on - strand, within AO353_16855at 3729.917 kb on + strand, within AO353_16855at 3729.917 kb on + strand, within AO353_16855at 3729.918 kb on - strand, within AO353_16855at 3729.918 kb on - strand, within AO353_16855at 3729.942 kb on + strand, within AO353_16855at 3729.942 kb on + strand, within AO353_16855at 3730.071 kb on + strand, within AO353_16855at 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.350 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.441 kb on - strandat 3730.441 kb on - strandat 3730.441 kb on - strandat 3730.441 kb on - strandat 3730.441 kb on - strandat 3730.630 kb on + strand, within AO353_16860at 3730.630 kb on + strandat 3730.631 kb on - strand, within AO353_16860at 3730.875 kb on + strand, within AO353_16860at 3730.875 kb on + strand, within AO353_16860at 3730.875 kb on + strand, within AO353_16860at 3730.876 kb on - strand, within AO353_16860at 3730.876 kb on - strand, within AO353_16860at 3730.912 kb on + strand, within AO353_16860at 3730.912 kb on + strand, within AO353_16860at 3730.912 kb on + strand, within AO353_16860at 3730.912 kb on + strand, within AO353_16860at 3730.912 kb on + strand, within AO353_16860at 3730.913 kb on - strand, within AO353_16860at 3730.913 kb on - strand, within AO353_16860at 3730.913 kb on - strand, within AO353_16860at 3730.913 kb on - strand, within AO353_16860at 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.997 kb on - strandat 3731.013 kb on + strandat 3731.013 kb on + strandat 3731.013 kb on + strandat 3731.014 kb on - strandat 3731.014 kb on - strandat 3731.014 kb on - strandat 3731.014 kb on - strandat 3731.099 kb on + strandat 3731.100 kb on - strandat 3731.100 kb on - strandat 3731.123 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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3,728,634 + +0.8
3,728,634 + -1.7
3,728,649 + -0.8
3,728,649 + -0.5
3,728,649 + +0.7
3,729,502 + -0.3
3,729,502 + +0.7
3,729,502 + -2.7
3,729,502 + +0.2
3,729,502 + +0.7
3,729,502 + +0.9
3,729,502 + -2.7
3,729,502 + -0.9
3,729,502 + -1.6
3,729,503 - +1.1
3,729,503 - -1.0
3,729,503 - +0.2
3,729,503 - -1.8
3,729,503 - +1.1
3,729,503 - +0.5
3,729,503 - -0.5
3,729,679 + -0.3
3,729,679 + -0.3
3,729,679 + -0.2
3,729,679 + -1.0
3,729,679 + +1.8
3,729,679 + +0.8
3,729,679 + -0.3
3,729,680 - +0.2
3,729,680 - +0.2
3,729,680 - +1.4
3,729,680 - -1.9
3,729,707 + AO353_16855 0.13 -2.0
3,729,708 - AO353_16855 0.13 +0.5
3,729,810 + AO353_16855 0.28 -0.6
3,729,810 + AO353_16855 0.28 -0.5
3,729,811 - AO353_16855 0.28 -0.1
3,729,917 + AO353_16855 0.43 -1.0
3,729,917 + AO353_16855 0.43 -2.5
3,729,918 - AO353_16855 0.43 +0.7
3,729,918 - AO353_16855 0.43 +1.2
3,729,942 + AO353_16855 0.47 -2.2
3,729,942 + AO353_16855 0.47 -0.8
3,730,071 + AO353_16855 0.65 -1.1
3,730,307 + -0.9
3,730,307 + -1.0
3,730,307 + -1.2
3,730,307 + -0.8
3,730,307 + +0.1
3,730,307 + -0.4
3,730,307 + +0.4
3,730,307 + -0.4
3,730,308 - +0.8
3,730,308 - -0.2
3,730,308 - -0.7
3,730,308 - -0.1
3,730,308 - +0.5
3,730,308 - -0.4
3,730,308 - -0.5
3,730,308 - -0.7
3,730,308 - -0.4
3,730,308 - -0.8
3,730,308 - -1.1
3,730,350 + -0.2
3,730,440 + +0.8
3,730,440 + -0.0
3,730,440 + -1.0
3,730,440 + -0.1
3,730,440 + -0.0
3,730,440 + -0.3
3,730,440 + +0.7
3,730,440 + -1.4
3,730,440 + -1.5
3,730,441 - -0.2
3,730,441 - +1.8
3,730,441 - -0.2
3,730,441 - -1.2
3,730,441 - -0.5
3,730,630 + AO353_16860 0.14 -0.1
3,730,630 + +1.0
3,730,631 - AO353_16860 0.15 -0.2
3,730,875 + AO353_16860 0.67 -0.0
3,730,875 + AO353_16860 0.67 -0.7
3,730,875 + AO353_16860 0.67 -1.8
3,730,876 - AO353_16860 0.67 -0.2
3,730,876 - AO353_16860 0.67 -0.2
3,730,912 + AO353_16860 0.75 +0.6
3,730,912 + AO353_16860 0.75 +0.7
3,730,912 + AO353_16860 0.75 +0.5
3,730,912 + AO353_16860 0.75 -1.4
3,730,912 + AO353_16860 0.75 +2.1
3,730,913 - AO353_16860 0.75 -1.8
3,730,913 - AO353_16860 0.75 -0.4
3,730,913 - AO353_16860 0.75 +0.4
3,730,913 - AO353_16860 0.75 -0.2
3,730,996 + -0.2
3,730,996 + -1.9
3,730,996 + +1.4
3,730,996 + -0.1
3,730,996 + -1.2
3,730,996 + +0.8
3,730,996 + -1.0
3,730,997 - +1.2
3,731,013 + +0.8
3,731,013 + -1.8
3,731,013 + +1.0
3,731,014 - +0.6
3,731,014 - +0.2
3,731,014 - -1.4
3,731,014 - -0.7
3,731,099 + -0.0
3,731,100 - -1.0
3,731,100 - +0.7
3,731,123 + -0.2

Or see this region's nucleotide sequence