Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14095

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14085 and AO353_14090 are separated by 205 nucleotidesAO353_14090 and AO353_14095 are separated by 194 nucleotidesAO353_14095 and AO353_14100 are separated by 240 nucleotidesAO353_14100 and AO353_14105 are separated by 35 nucleotides AO353_14085: AO353_14085 - hypothetical protein, at 3,131,504 to 3,131,761 _14085 AO353_14090: AO353_14090 - alkylphosphonate utilization protein, at 3,131,967 to 3,132,308 _14090 AO353_14095: AO353_14095 - octaprenyl-diphosphate synthase, at 3,132,503 to 3,133,471 _14095 AO353_14100: AO353_14100 - 50S ribosomal protein L21, at 3,133,712 to 3,134,026 _14100 AO353_14105: AO353_14105 - 50S ribosomal protein L27, at 3,134,062 to 3,134,319 _14105 Position (kb) 3132 3133 3134Strain fitness (log2 ratio) -2 -1 0 1 2at 3131.507 kb on + strandat 3131.507 kb on + strandat 3131.507 kb on + strandat 3131.507 kb on + strandat 3131.507 kb on + strandat 3131.508 kb on - strandat 3131.508 kb on - strandat 3131.557 kb on - strand, within AO353_14085at 3131.564 kb on + strand, within AO353_14085at 3131.564 kb on + strand, within AO353_14085at 3131.564 kb on + strand, within AO353_14085at 3131.565 kb on - strand, within AO353_14085at 3131.565 kb on - strand, within AO353_14085at 3131.718 kb on + strand, within AO353_14085at 3131.718 kb on + strand, within AO353_14085at 3131.718 kb on + strand, within AO353_14085at 3131.719 kb on - strand, within AO353_14085at 3131.719 kb on - strand, within AO353_14085at 3131.719 kb on - strand, within AO353_14085at 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.779 kb on + strandat 3131.780 kb on - strandat 3131.811 kb on + strandat 3131.815 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.850 kb on + strandat 3131.850 kb on + strandat 3131.890 kb on - strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strandat 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.268 kb on + strand, within AO353_14090at 3132.268 kb on + strand, within AO353_14090at 3132.268 kb on + strand, within AO353_14090at 3132.269 kb on - strand, within AO353_14090at 3132.269 kb on - strand, within AO353_14090at 3132.309 kb on + strandat 3132.309 kb on + strandat 3132.309 kb on + strandat 3132.310 kb on - strandat 3132.310 kb on - strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.349 kb on + strandat 3132.349 kb on + strandat 3132.349 kb on + strandat 3132.349 kb on + strandat 3132.350 kb on - strandat 3132.350 kb on - strandat 3132.351 kb on + strandat 3132.352 kb on - strandat 3132.352 kb on - strandat 3132.359 kb on + strandat 3132.428 kb on + strandat 3132.428 kb on + strandat 3132.428 kb on + strandat 3132.428 kb on + strandat 3132.429 kb on - strandat 3132.429 kb on - strandat 3132.429 kb on - strandat 3132.429 kb on - strandat 3132.429 kb on - strandat 3133.509 kb on - strandat 3134.398 kb on + strandat 3134.398 kb on + strandat 3134.419 kb on + strandat 3134.466 kb on + strandat 3134.466 kb on + strandat 3134.466 kb on + strandat 3134.466 kb on + strandat 3134.466 kb on + strandat 3134.466 kb on + strandat 3134.466 kb on + strandat 3134.466 kb on + strandat 3134.466 kb on + strandat 3134.466 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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3,131,507 + +0.1
3,131,507 + -2.4
3,131,507 + -0.2
3,131,507 + -0.6
3,131,507 + -0.9
3,131,508 - +0.4
3,131,508 - +0.7
3,131,557 - AO353_14085 0.21 +0.1
3,131,564 + AO353_14085 0.23 -1.6
3,131,564 + AO353_14085 0.23 +0.2
3,131,564 + AO353_14085 0.23 +0.2
3,131,565 - AO353_14085 0.24 +2.1
3,131,565 - AO353_14085 0.24 -0.5
3,131,718 + AO353_14085 0.83 -0.3
3,131,718 + AO353_14085 0.83 +0.4
3,131,718 + AO353_14085 0.83 +0.4
3,131,719 - AO353_14085 0.83 -0.2
3,131,719 - AO353_14085 0.83 -0.1
3,131,719 - AO353_14085 0.83 +0.7
3,131,754 + -0.7
3,131,754 + -2.3
3,131,754 + -0.7
3,131,754 + -0.7
3,131,754 + +1.8
3,131,754 + -0.0
3,131,754 + +0.2
3,131,754 + +0.2
3,131,754 + -1.1
3,131,754 + -0.3
3,131,754 + +0.0
3,131,754 + +0.0
3,131,754 + -0.3
3,131,754 + +1.4
3,131,754 + -0.4
3,131,754 + -0.3
3,131,754 + -0.1
3,131,754 + +0.3
3,131,754 + -0.4
3,131,755 - -1.0
3,131,755 - +0.2
3,131,755 - -0.7
3,131,755 - -1.6
3,131,755 - +0.6
3,131,755 - +1.1
3,131,755 - -0.9
3,131,755 - +0.2
3,131,755 - +0.1
3,131,755 - -0.5
3,131,755 - +0.1
3,131,755 - +1.0
3,131,755 - -2.1
3,131,755 - -0.3
3,131,779 + -0.2
3,131,780 - -0.1
3,131,811 + -0.0
3,131,815 - -1.3
3,131,822 - -0.0
3,131,822 - +1.4
3,131,822 - -0.4
3,131,822 - -0.3
3,131,822 - -0.9
3,131,822 - -0.0
3,131,822 - +1.6
3,131,822 - -0.4
3,131,822 - -1.6
3,131,822 - +1.0
3,131,822 - -0.8
3,131,826 - -0.4
3,131,826 - -1.3
3,131,826 - +0.5
3,131,826 - -1.4
3,131,826 - +0.9
3,131,826 - +1.2
3,131,826 - +0.8
3,131,826 - +0.8
3,131,826 - -0.3
3,131,826 - -1.5
3,131,826 - +0.3
3,131,826 - -0.2
3,131,826 - -2.2
3,131,826 - -0.2
3,131,826 - -0.9
3,131,826 - -0.2
3,131,850 + +1.7
3,131,850 + -0.3
3,131,890 - +0.3
3,131,957 + -0.2
3,131,957 + +0.7
3,131,957 + -0.5
3,131,957 + +1.0
3,131,957 + -0.3
3,131,957 + +0.6
3,131,957 + -0.7
3,131,957 + +0.5
3,131,958 - -1.9
3,131,958 - -0.8
3,131,958 - +1.2
3,131,958 - -0.3
3,131,958 - +0.3
3,131,958 - +0.9
3,131,958 - -0.5
3,131,958 - +0.4
3,132,262 + AO353_14090 0.86 -0.8
3,132,262 + AO353_14090 0.86 +0.2
3,132,262 + AO353_14090 0.86 +0.3
3,132,262 + AO353_14090 0.86 -0.1
3,132,262 + AO353_14090 0.86 +0.8
3,132,262 + AO353_14090 0.86 +0.9
3,132,262 + AO353_14090 0.86 -0.4
3,132,262 + AO353_14090 0.86 -0.4
3,132,262 + AO353_14090 0.86 -0.0
3,132,262 + AO353_14090 0.86 +1.3
3,132,262 + AO353_14090 0.86 +0.1
3,132,262 + AO353_14090 0.86 -1.3
3,132,262 + AO353_14090 0.86 +0.1
3,132,263 - AO353_14090 0.87 -1.5
3,132,263 - AO353_14090 0.87 -1.3
3,132,263 - AO353_14090 0.87 -0.3
3,132,263 - AO353_14090 0.87 -1.2
3,132,263 - +1.9
3,132,263 - AO353_14090 0.87 -0.4
3,132,263 - AO353_14090 0.87 +0.6
3,132,263 - AO353_14090 0.87 +0.9
3,132,263 - AO353_14090 0.87 -1.1
3,132,263 - AO353_14090 0.87 -1.4
3,132,263 - AO353_14090 0.87 -0.1
3,132,263 - AO353_14090 0.87 -0.3
3,132,263 - AO353_14090 0.87 -0.3
3,132,268 + AO353_14090 0.88 +1.1
3,132,268 + AO353_14090 0.88 +1.9
3,132,268 + AO353_14090 0.88 +0.7
3,132,269 - AO353_14090 0.88 -0.7
3,132,269 - AO353_14090 0.88 +0.1
3,132,309 + +0.4
3,132,309 + +0.9
3,132,309 + -0.2
3,132,310 - -0.5
3,132,310 - +0.8
3,132,347 + +1.9
3,132,347 + +0.7
3,132,347 + +0.8
3,132,347 + +0.3
3,132,347 + +0.1
3,132,347 + -0.6
3,132,347 + +0.1
3,132,347 + -0.1
3,132,347 + -0.7
3,132,348 - -0.4
3,132,348 - -0.1
3,132,348 - +0.3
3,132,348 - +1.2
3,132,348 - -1.1
3,132,348 - -0.6
3,132,348 - +0.4
3,132,348 - -0.1
3,132,348 - -1.9
3,132,348 - -0.2
3,132,348 - +0.7
3,132,348 - +0.6
3,132,348 - -1.3
3,132,348 - -0.1
3,132,349 + +0.0
3,132,349 + -0.4
3,132,349 + -0.4
3,132,349 + +0.6
3,132,350 - +1.8
3,132,350 - -0.1
3,132,351 + +0.9
3,132,352 - -1.8
3,132,352 - -1.9
3,132,359 + -0.7
3,132,428 + +1.5
3,132,428 + -0.0
3,132,428 + -1.1
3,132,428 + -0.6
3,132,429 - +0.5
3,132,429 - +1.9
3,132,429 - -0.2
3,132,429 - +0.5
3,132,429 - -0.1
3,133,509 - +1.9
3,134,398 + +0.3
3,134,398 + +1.3
3,134,419 + -0.0
3,134,466 + -0.7
3,134,466 + +1.3
3,134,466 + -0.7
3,134,466 + -1.4
3,134,466 + -0.3
3,134,466 + -1.0
3,134,466 + -0.5
3,134,466 + -0.1
3,134,466 + -2.1
3,134,466 + -0.3

Or see this region's nucleotide sequence