Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20410

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS20405 and ABZR86_RS20410 are separated by 168 nucleotidesABZR86_RS20410 and ABZR86_RS20415 are separated by 194 nucleotides ABZR86_RS20405: ABZR86_RS20405 - PepSY-associated TM helix domain-containing protein, at 22,444 to 23,574 _RS20405 ABZR86_RS20410: ABZR86_RS20410 - transporter, at 23,743 to 24,651 _RS20410 ABZR86_RS20415: ABZR86_RS20415 - PLP-dependent aminotransferase family protein, at 24,846 to 26,321 _RS20415 Position (kb) 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 22.770 kb on + strand, within ABZR86_RS20405at 22.770 kb on + strand, within ABZR86_RS20405at 22.770 kb on + strand, within ABZR86_RS20405at 22.770 kb on + strand, within ABZR86_RS20405at 22.869 kb on + strand, within ABZR86_RS20405at 22.869 kb on + strand, within ABZR86_RS20405at 22.870 kb on - strand, within ABZR86_RS20405at 22.932 kb on - strand, within ABZR86_RS20405at 23.036 kb on + strand, within ABZR86_RS20405at 23.036 kb on + strand, within ABZR86_RS20405at 23.036 kb on + strand, within ABZR86_RS20405at 23.036 kb on + strand, within ABZR86_RS20405at 23.037 kb on - strand, within ABZR86_RS20405at 23.037 kb on - strand, within ABZR86_RS20405at 23.250 kb on - strand, within ABZR86_RS20405at 23.609 kb on + strandat 23.609 kb on + strandat 23.660 kb on + strandat 23.660 kb on + strandat 23.661 kb on - strandat 23.661 kb on - strandat 23.661 kb on - strandat 23.661 kb on - strandat 23.744 kb on + strandat 23.744 kb on + strandat 23.744 kb on + strandat 23.753 kb on + strandat 23.753 kb on + strandat 23.754 kb on - strandat 23.754 kb on - strandat 23.788 kb on + strandat 23.788 kb on + strandat 23.788 kb on + strandat 23.788 kb on + strandat 23.789 kb on - strandat 23.789 kb on - strandat 23.789 kb on - strandat 23.789 kb on - strandat 23.852 kb on + strand, within ABZR86_RS20410at 23.852 kb on + strand, within ABZR86_RS20410at 23.939 kb on + strand, within ABZR86_RS20410at 23.939 kb on + strand, within ABZR86_RS20410at 23.939 kb on + strand, within ABZR86_RS20410at 23.940 kb on - strand, within ABZR86_RS20410at 23.940 kb on - strand, within ABZR86_RS20410at 23.972 kb on + strand, within ABZR86_RS20410at 23.972 kb on + strand, within ABZR86_RS20410at 23.973 kb on - strand, within ABZR86_RS20410at 23.973 kb on - strand, within ABZR86_RS20410at 24.014 kb on + strand, within ABZR86_RS20410at 24.014 kb on + strand, within ABZR86_RS20410at 24.035 kb on + strand, within ABZR86_RS20410at 24.035 kb on + strand, within ABZR86_RS20410at 24.035 kb on + strand, within ABZR86_RS20410at 24.035 kb on + strand, within ABZR86_RS20410at 24.036 kb on - strand, within ABZR86_RS20410at 24.036 kb on - strand, within ABZR86_RS20410at 24.036 kb on - strand, within ABZR86_RS20410at 24.086 kb on + strand, within ABZR86_RS20410at 24.086 kb on + strand, within ABZR86_RS20410at 24.087 kb on - strand, within ABZR86_RS20410at 24.179 kb on + strand, within ABZR86_RS20410at 24.180 kb on - strand, within ABZR86_RS20410at 24.180 kb on - strand, within ABZR86_RS20410at 24.261 kb on - strand, within ABZR86_RS20410at 24.298 kb on + strand, within ABZR86_RS20410at 24.299 kb on - strand, within ABZR86_RS20410at 24.458 kb on + strand, within ABZR86_RS20410at 24.459 kb on - strand, within ABZR86_RS20410at 24.459 kb on - strand, within ABZR86_RS20410at 24.512 kb on + strand, within ABZR86_RS20410at 24.512 kb on + strand, within ABZR86_RS20410at 24.512 kb on + strand, within ABZR86_RS20410at 24.512 kb on + strand, within ABZR86_RS20410at 24.512 kb on + strand, within ABZR86_RS20410at 24.513 kb on - strand, within ABZR86_RS20410at 24.513 kb on - strand, within ABZR86_RS20410at 24.513 kb on - strand, within ABZR86_RS20410at 24.513 kb on - strand, within ABZR86_RS20410at 24.513 kb on - strand, within ABZR86_RS20410at 24.513 kb on - strand, within ABZR86_RS20410at 24.513 kb on - strand, within ABZR86_RS20410at 24.513 kb on - strand, within ABZR86_RS20410at 24.513 kb on - strand, within ABZR86_RS20410at 24.518 kb on + strand, within ABZR86_RS20410at 24.518 kb on + strand, within ABZR86_RS20410at 24.518 kb on + strand, within ABZR86_RS20410at 24.519 kb on - strand, within ABZR86_RS20410at 24.519 kb on - strand, within ABZR86_RS20410at 24.519 kb on - strand, within ABZR86_RS20410at 24.519 kb on - strand, within ABZR86_RS20410at 24.519 kb on - strand, within ABZR86_RS20410at 24.534 kb on + strand, within ABZR86_RS20410at 24.535 kb on - strand, within ABZR86_RS20410at 24.535 kb on - strand, within ABZR86_RS20410at 24.652 kb on + strandat 24.652 kb on + strandat 24.652 kb on + strandat 24.653 kb on - strandat 24.775 kb on + strandat 24.776 kb on - strandat 24.776 kb on - strandat 24.776 kb on - strandat 24.776 kb on - strandat 24.813 kb on - strandat 25.065 kb on + strand, within ABZR86_RS20415at 25.348 kb on + strand, within ABZR86_RS20415at 25.349 kb on - strand, within ABZR86_RS20415at 25.349 kb on - strand, within ABZR86_RS20415at 25.350 kb on + strand, within ABZR86_RS20415at 25.351 kb on - strand, within ABZR86_RS20415at 25.351 kb on - strand, within ABZR86_RS20415at 25.351 kb on - strand, within ABZR86_RS20415at 25.399 kb on - strand, within ABZR86_RS20415at 25.441 kb on + strand, within ABZR86_RS20415at 25.442 kb on - strand, within ABZR86_RS20415

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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22,770 + ABZR86_RS20405 0.29 -0.4
22,770 + ABZR86_RS20405 0.29 +0.4
22,770 + ABZR86_RS20405 0.29 +0.3
22,770 + ABZR86_RS20405 0.29 -0.1
22,869 + ABZR86_RS20405 0.38 +0.4
22,869 + ABZR86_RS20405 0.38 -2.0
22,870 - ABZR86_RS20405 0.38 -0.2
22,932 - ABZR86_RS20405 0.43 +0.8
23,036 + ABZR86_RS20405 0.52 -0.1
23,036 + ABZR86_RS20405 0.52 +0.7
23,036 + ABZR86_RS20405 0.52 +0.2
23,036 + ABZR86_RS20405 0.52 +0.2
23,037 - ABZR86_RS20405 0.52 +0.5
23,037 - ABZR86_RS20405 0.52 +0.3
23,250 - ABZR86_RS20405 0.71 -0.4
23,609 + +0.9
23,609 + +0.6
23,660 + +0.7
23,660 + +0.8
23,661 - -2.3
23,661 - +0.5
23,661 - -0.8
23,661 - -0.6
23,744 + -0.2
23,744 + +0.8
23,744 + +2.5
23,753 + +0.0
23,753 + +0.5
23,754 - -2.9
23,754 - -0.7
23,788 + -1.7
23,788 + +0.9
23,788 + +1.0
23,788 + -0.3
23,789 - -1.4
23,789 - +1.2
23,789 - -3.5
23,789 - +0.5
23,852 + ABZR86_RS20410 0.12 -0.4
23,852 + ABZR86_RS20410 0.12 -3.2
23,939 + ABZR86_RS20410 0.22 -0.1
23,939 + ABZR86_RS20410 0.22 +0.4
23,939 + ABZR86_RS20410 0.22 -0.7
23,940 - ABZR86_RS20410 0.22 +0.9
23,940 - ABZR86_RS20410 0.22 +0.1
23,972 + ABZR86_RS20410 0.25 -1.2
23,972 + ABZR86_RS20410 0.25 -1.0
23,973 - ABZR86_RS20410 0.25 +0.9
23,973 - ABZR86_RS20410 0.25 -3.0
24,014 + ABZR86_RS20410 0.30 -0.6
24,014 + ABZR86_RS20410 0.30 +0.3
24,035 + ABZR86_RS20410 0.32 +0.3
24,035 + ABZR86_RS20410 0.32 +0.3
24,035 + ABZR86_RS20410 0.32 -0.9
24,035 + ABZR86_RS20410 0.32 +1.5
24,036 - ABZR86_RS20410 0.32 +1.0
24,036 - ABZR86_RS20410 0.32 -0.4
24,036 - ABZR86_RS20410 0.32 +0.2
24,086 + ABZR86_RS20410 0.38 +1.0
24,086 + ABZR86_RS20410 0.38 -1.7
24,087 - ABZR86_RS20410 0.38 -2.1
24,179 + ABZR86_RS20410 0.48 -2.1
24,180 - ABZR86_RS20410 0.48 -0.1
24,180 - ABZR86_RS20410 0.48 +1.5
24,261 - ABZR86_RS20410 0.57 -2.5
24,298 + ABZR86_RS20410 0.61 +1.0
24,299 - ABZR86_RS20410 0.61 -2.1
24,458 + ABZR86_RS20410 0.79 +1.0
24,459 - ABZR86_RS20410 0.79 +0.7
24,459 - ABZR86_RS20410 0.79 -2.3
24,512 + ABZR86_RS20410 0.85 -0.1
24,512 + ABZR86_RS20410 0.85 +0.1
24,512 + ABZR86_RS20410 0.85 +0.5
24,512 + ABZR86_RS20410 0.85 -0.8
24,512 + ABZR86_RS20410 0.85 +1.0
24,513 - ABZR86_RS20410 0.85 -3.4
24,513 - ABZR86_RS20410 0.85 -0.1
24,513 - ABZR86_RS20410 0.85 -0.1
24,513 - ABZR86_RS20410 0.85 +0.6
24,513 - ABZR86_RS20410 0.85 +0.2
24,513 - ABZR86_RS20410 0.85 -1.3
24,513 - ABZR86_RS20410 0.85 -0.2
24,513 - ABZR86_RS20410 0.85 +0.5
24,513 - ABZR86_RS20410 0.85 -0.4
24,518 + ABZR86_RS20410 0.85 -2.4
24,518 + ABZR86_RS20410 0.85 -0.0
24,518 + ABZR86_RS20410 0.85 +0.2
24,519 - ABZR86_RS20410 0.85 -0.5
24,519 - ABZR86_RS20410 0.85 -0.3
24,519 - ABZR86_RS20410 0.85 -1.4
24,519 - ABZR86_RS20410 0.85 -0.6
24,519 - ABZR86_RS20410 0.85 -0.4
24,534 + ABZR86_RS20410 0.87 -0.5
24,535 - ABZR86_RS20410 0.87 -0.5
24,535 - ABZR86_RS20410 0.87 -0.2
24,652 + +0.8
24,652 + -1.1
24,652 + +0.6
24,653 - -2.5
24,775 + -2.0
24,776 - +2.4
24,776 - -0.0
24,776 - -1.1
24,776 - -1.1
24,813 - +2.2
25,065 + ABZR86_RS20415 0.15 -0.4
25,348 + ABZR86_RS20415 0.34 +2.7
25,349 - ABZR86_RS20415 0.34 +0.0
25,349 - ABZR86_RS20415 0.34 -1.8
25,350 + ABZR86_RS20415 0.34 +0.6
25,351 - ABZR86_RS20415 0.34 +0.0
25,351 - ABZR86_RS20415 0.34 +1.7
25,351 - ABZR86_RS20415 0.34 -0.4
25,399 - ABZR86_RS20415 0.37 -1.8
25,441 + ABZR86_RS20415 0.40 +0.3
25,442 - ABZR86_RS20415 0.40 +1.6

Or see this region's nucleotide sequence