Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20380 and ABZR86_RS20385 are separated by 169 nucleotides ABZR86_RS20385 and ABZR86_RS20390 are separated by 14 nucleotides ABZR86_RS20390 and ABZR86_RS20395 are separated by 406 nucleotides
ABZR86_RS20380: ABZR86_RS20380 - TetR/AcrR family transcriptional regulator, at 13,559 to 14,140
_RS20380
ABZR86_RS20385: ABZR86_RS20385 - STAS domain-containing protein, at 14,310 to 14,702
_RS20385
ABZR86_RS20390: ABZR86_RS20390 - SpoIIE family protein phosphatase, at 14,717 to 17,023
_RS20390
ABZR86_RS20395: ABZR86_RS20395 - MFS transporter, at 17,430 to 18,689
_RS20395
Position (kb) 14
15
16
17
18 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 13.878 kb on + strand, within ABZR86_RS20380 at 13.878 kb on + strand, within ABZR86_RS20380 at 14.301 kb on + strand at 14.301 kb on + strand at 14.302 kb on - strand at 14.311 kb on + strand at 14.312 kb on - strand at 14.350 kb on - strand, within ABZR86_RS20385 at 14.363 kb on - strand, within ABZR86_RS20385 at 14.466 kb on - strand, within ABZR86_RS20385 at 14.466 kb on - strand, within ABZR86_RS20385 at 14.533 kb on + strand, within ABZR86_RS20385 at 14.684 kb on + strand at 14.772 kb on + strand at 14.772 kb on + strand at 14.773 kb on - strand at 15.271 kb on - strand, within ABZR86_RS20390 at 15.351 kb on + strand, within ABZR86_RS20390 at 15.352 kb on - strand, within ABZR86_RS20390 at 15.399 kb on + strand, within ABZR86_RS20390 at 15.400 kb on - strand, within ABZR86_RS20390 at 15.744 kb on + strand, within ABZR86_RS20390 at 15.745 kb on - strand, within ABZR86_RS20390 at 15.751 kb on - strand, within ABZR86_RS20390 at 15.751 kb on - strand, within ABZR86_RS20390 at 16.171 kb on - strand, within ABZR86_RS20390 at 16.171 kb on - strand, within ABZR86_RS20390 at 16.233 kb on + strand, within ABZR86_RS20390 at 16.233 kb on + strand, within ABZR86_RS20390 at 16.276 kb on + strand, within ABZR86_RS20390 at 16.371 kb on + strand, within ABZR86_RS20390 at 16.371 kb on + strand, within ABZR86_RS20390 at 16.372 kb on - strand, within ABZR86_RS20390 at 16.372 kb on - strand, within ABZR86_RS20390 at 16.719 kb on + strand, within ABZR86_RS20390 at 16.719 kb on + strand, within ABZR86_RS20390 at 16.719 kb on + strand, within ABZR86_RS20390 at 16.720 kb on - strand, within ABZR86_RS20390 at 16.720 kb on - strand, within ABZR86_RS20390 at 16.720 kb on - strand, within ABZR86_RS20390 at 17.008 kb on + strand at 17.202 kb on - strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.304 kb on - strand at 17.304 kb on - strand at 17.304 kb on - strand at 17.343 kb on + strand at 17.344 kb on - strand at 17.351 kb on + strand at 17.488 kb on - strand at 17.572 kb on - strand, within ABZR86_RS20395 at 17.610 kb on - strand, within ABZR86_RS20395 at 17.778 kb on + strand, within ABZR86_RS20395 at 17.779 kb on - strand, within ABZR86_RS20395 at 17.796 kb on + strand, within ABZR86_RS20395 at 17.796 kb on + strand, within ABZR86_RS20395
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 13,878 + ABZR86_RS20380 0.55 +0.7 13,878 + ABZR86_RS20380 0.55 -0.7 14,301 + -0.1 14,301 + -0.4 14,302 - +0.6 14,311 + +1.5 14,312 - -3.9 14,350 - ABZR86_RS20385 0.10 -1.1 14,363 - ABZR86_RS20385 0.13 +1.8 14,466 - ABZR86_RS20385 0.40 -1.7 14,466 - ABZR86_RS20385 0.40 +1.0 14,533 + ABZR86_RS20385 0.57 +0.4 14,684 + +0.7 14,772 + +0.7 14,772 + +1.1 14,773 - -0.3 15,271 - ABZR86_RS20390 0.24 -0.2 15,351 + ABZR86_RS20390 0.27 +0.8 15,352 - ABZR86_RS20390 0.28 -1.5 15,399 + ABZR86_RS20390 0.30 -0.9 15,400 - ABZR86_RS20390 0.30 +0.5 15,744 + ABZR86_RS20390 0.45 -0.9 15,745 - ABZR86_RS20390 0.45 -0.4 15,751 - ABZR86_RS20390 0.45 -0.3 15,751 - ABZR86_RS20390 0.45 +1.4 16,171 - ABZR86_RS20390 0.63 -0.3 16,171 - ABZR86_RS20390 0.63 +0.1 16,233 + ABZR86_RS20390 0.66 +1.0 16,233 + ABZR86_RS20390 0.66 +0.7 16,276 + ABZR86_RS20390 0.68 -2.5 16,371 + ABZR86_RS20390 0.72 -0.4 16,371 + ABZR86_RS20390 0.72 +0.1 16,372 - ABZR86_RS20390 0.72 -0.9 16,372 - ABZR86_RS20390 0.72 -0.5 16,719 + ABZR86_RS20390 0.87 +1.6 16,719 + ABZR86_RS20390 0.87 +1.9 16,719 + ABZR86_RS20390 0.87 -2.1 16,720 - ABZR86_RS20390 0.87 +1.2 16,720 - ABZR86_RS20390 0.87 +0.7 16,720 - ABZR86_RS20390 0.87 +0.3 17,008 + -2.7 17,202 - +0.0 17,303 + +0.4 17,303 + -0.1 17,303 + -0.1 17,303 + +2.4 17,303 + +0.9 17,303 + +0.2 17,303 + +0.5 17,304 - -1.0 17,304 - +0.8 17,304 - +0.1 17,343 + -1.1 17,344 - +1.9 17,351 + -0.5 17,488 - +1.8 17,572 - ABZR86_RS20395 0.11 -0.6 17,610 - ABZR86_RS20395 0.14 +0.6 17,778 + ABZR86_RS20395 0.28 -2.0 17,779 - ABZR86_RS20395 0.28 -0.2 17,796 + ABZR86_RS20395 0.29 +0.3 17,796 + ABZR86_RS20395 0.29 +1.2
Or see this region's nucleotide sequence