Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18885

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18880 and ABZR86_RS18885 are separated by 527 nucleotidesABZR86_RS18885 and ABZR86_RS18890 are separated by 311 nucleotides ABZR86_RS18880: ABZR86_RS18880 - glycine cleavage system protein GcvH, at 206,863 to 207,258 _RS18880 ABZR86_RS18885: ABZR86_RS18885 - met regulon transcriptional regulator MetJ, at 207,786 to 208,340 _RS18885 ABZR86_RS18890: ABZR86_RS18890 - energy transducer TonB, at 208,652 to 209,683 _RS18890 Position (kb) 207 208 209Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 206.806 kb on + strandat 206.806 kb on + strandat 206.806 kb on + strandat 206.807 kb on - strandat 206.807 kb on - strandat 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.986 kb on + strand, within ABZR86_RS18880at 206.987 kb on - strand, within ABZR86_RS18880at 207.073 kb on + strand, within ABZR86_RS18880at 207.073 kb on + strand, within ABZR86_RS18880at 207.074 kb on - strand, within ABZR86_RS18880at 207.074 kb on - strand, within ABZR86_RS18880at 207.074 kb on - strand, within ABZR86_RS18880at 207.074 kb on - strand, within ABZR86_RS18880at 207.074 kb on - strand, within ABZR86_RS18880at 207.559 kb on - strandat 207.613 kb on - strandat 207.752 kb on + strandat 207.768 kb on + strandat 207.813 kb on + strandat 207.813 kb on + strandat 207.814 kb on - strandat 207.863 kb on + strand, within ABZR86_RS18885at 207.864 kb on - strand, within ABZR86_RS18885at 207.864 kb on - strand, within ABZR86_RS18885at 207.880 kb on + strand, within ABZR86_RS18885at 207.903 kb on - strand, within ABZR86_RS18885at 207.978 kb on - strand, within ABZR86_RS18885at 208.019 kb on + strand, within ABZR86_RS18885at 208.020 kb on - strand, within ABZR86_RS18885at 208.020 kb on - strand, within ABZR86_RS18885at 208.020 kb on - strand, within ABZR86_RS18885at 208.020 kb on - strand, within ABZR86_RS18885at 208.338 kb on + strandat 208.338 kb on + strandat 208.338 kb on + strandat 208.339 kb on - strandat 208.339 kb on - strandat 208.551 kb on + strandat 208.552 kb on - strandat 208.603 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.668 kb on + strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.669 kb on - strandat 208.700 kb on - strandat 208.716 kb on + strandat 208.716 kb on + strandat 208.717 kb on - strandat 208.964 kb on + strand, within ABZR86_RS18890at 208.964 kb on + strand, within ABZR86_RS18890at 208.964 kb on + strand, within ABZR86_RS18890at 208.965 kb on - strand, within ABZR86_RS18890at 209.045 kb on - strand, within ABZR86_RS18890at 209.129 kb on + strand, within ABZR86_RS18890at 209.130 kb on - strand, within ABZR86_RS18890at 209.130 kb on - strand, within ABZR86_RS18890at 209.140 kb on + strand, within ABZR86_RS18890

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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206,806 + +1.0
206,806 + +0.1
206,806 + -1.1
206,807 - +0.6
206,807 - +0.3
206,986 + ABZR86_RS18880 0.31 +1.6
206,986 + ABZR86_RS18880 0.31 -2.4
206,986 + ABZR86_RS18880 0.31 -0.6
206,986 + ABZR86_RS18880 0.31 +1.5
206,986 + ABZR86_RS18880 0.31 -0.9
206,986 + ABZR86_RS18880 0.31 -1.1
206,986 + ABZR86_RS18880 0.31 -1.1
206,986 + ABZR86_RS18880 0.31 -1.3
206,986 + ABZR86_RS18880 0.31 -2.5
206,986 + ABZR86_RS18880 0.31 +0.4
206,986 + ABZR86_RS18880 0.31 -0.7
206,986 + ABZR86_RS18880 0.31 +0.1
206,986 + ABZR86_RS18880 0.31 +0.5
206,986 + ABZR86_RS18880 0.31 -0.6
206,987 - ABZR86_RS18880 0.31 -1.0
207,073 + ABZR86_RS18880 0.53 -1.7
207,073 + ABZR86_RS18880 0.53 -2.0
207,074 - ABZR86_RS18880 0.53 -0.3
207,074 - ABZR86_RS18880 0.53 +0.1
207,074 - ABZR86_RS18880 0.53 +0.3
207,074 - ABZR86_RS18880 0.53 -0.8
207,074 - ABZR86_RS18880 0.53 +0.1
207,559 - -3.5
207,613 - +0.8
207,752 + +1.1
207,768 + -1.8
207,813 + -0.8
207,813 + -3.6
207,814 - -1.8
207,863 + ABZR86_RS18885 0.14 +0.5
207,864 - ABZR86_RS18885 0.14 +0.7
207,864 - ABZR86_RS18885 0.14 -2.8
207,880 + ABZR86_RS18885 0.17 -1.7
207,903 - ABZR86_RS18885 0.21 -3.0
207,978 - ABZR86_RS18885 0.35 -2.9
208,019 + ABZR86_RS18885 0.42 +0.3
208,020 - ABZR86_RS18885 0.42 -0.5
208,020 - ABZR86_RS18885 0.42 -1.6
208,020 - ABZR86_RS18885 0.42 -0.4
208,020 - ABZR86_RS18885 0.42 -2.2
208,338 + -0.8
208,338 + -0.8
208,338 + -3.4
208,339 - -1.7
208,339 - -1.1
208,551 + -0.9
208,552 - +0.8
208,603 + -2.7
208,668 + -0.0
208,668 + +1.8
208,668 + -1.1
208,668 + -3.6
208,668 + -3.1
208,668 + +1.5
208,668 + +1.0
208,668 + -1.3
208,668 + +0.2
208,668 + -0.0
208,668 + -1.9
208,668 + +1.0
208,669 - -0.5
208,669 - +0.6
208,669 - +4.1
208,669 - -0.1
208,669 - +0.8
208,669 - +1.7
208,669 - -3.0
208,669 - +0.7
208,669 - -1.0
208,669 - +0.0
208,669 - +0.2
208,669 - -0.9
208,700 - +0.8
208,716 + -1.5
208,716 + -0.0
208,717 - -0.0
208,964 + ABZR86_RS18890 0.30 +0.0
208,964 + ABZR86_RS18890 0.30 -0.6
208,964 + ABZR86_RS18890 0.30 +1.5
208,965 - ABZR86_RS18890 0.30 -1.0
209,045 - ABZR86_RS18890 0.38 -2.6
209,129 + ABZR86_RS18890 0.46 -0.0
209,130 - ABZR86_RS18890 0.46 +0.4
209,130 - ABZR86_RS18890 0.46 -3.4
209,140 + ABZR86_RS18890 0.47 -0.4

Or see this region's nucleotide sequence