Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18080 and ABZR86_RS18085 are separated by 195 nucleotides ABZR86_RS18085 and ABZR86_RS18090 are separated by 25 nucleotides ABZR86_RS18090 and ABZR86_RS18095 are separated by 3 nucleotides
ABZR86_RS18080: ABZR86_RS18080 - sulfotransferase, at 31,865 to 32,791
_RS18080
ABZR86_RS18085: ABZR86_RS18085 - putative toxin-antitoxin system toxin component, PIN family, at 32,987 to 33,463
_RS18085
ABZR86_RS18090: ABZR86_RS18090 - CPXCG motif-containing cysteine-rich protein, at 33,489 to 33,674
_RS18090
ABZR86_RS18095: ABZR86_RS18095 - bifunctional nicotinamidase/pyrazinamidase, at 33,678 to 34,328
_RS18095
Position (kb) 32
33
34 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 32.206 kb on - strand, within ABZR86_RS18080 at 32.227 kb on - strand, within ABZR86_RS18080 at 32.586 kb on + strand, within ABZR86_RS18080 at 32.912 kb on + strand at 33.023 kb on + strand at 33.478 kb on - strand at 33.507 kb on + strand at 33.507 kb on + strand at 33.507 kb on + strand at 33.507 kb on + strand at 33.508 kb on - strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.570 kb on + strand, within ABZR86_RS18090 at 33.571 kb on - strand, within ABZR86_RS18090 at 33.571 kb on - strand, within ABZR86_RS18090 at 33.571 kb on - strand, within ABZR86_RS18090 at 33.571 kb on - strand, within ABZR86_RS18090 at 33.571 kb on - strand, within ABZR86_RS18090 at 33.865 kb on + strand, within ABZR86_RS18095 at 33.865 kb on + strand, within ABZR86_RS18095 at 33.865 kb on + strand, within ABZR86_RS18095 at 33.865 kb on + strand, within ABZR86_RS18095 at 33.865 kb on + strand, within ABZR86_RS18095 at 33.866 kb on - strand, within ABZR86_RS18095 at 33.866 kb on - strand, within ABZR86_RS18095 at 33.958 kb on + strand, within ABZR86_RS18095 at 34.090 kb on + strand, within ABZR86_RS18095 at 34.090 kb on + strand, within ABZR86_RS18095 at 34.091 kb on - strand, within ABZR86_RS18095 at 34.365 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 32,206 - ABZR86_RS18080 0.37 -0.5 32,227 - ABZR86_RS18080 0.39 +0.9 32,586 + ABZR86_RS18080 0.78 -2.5 32,912 + -0.5 33,023 + -0.5 33,478 - +0.6 33,507 + -0.4 33,507 + -0.3 33,507 + -0.6 33,507 + -0.5 33,508 - ABZR86_RS18090 0.10 -0.5 33,570 + ABZR86_RS18090 0.44 +0.5 33,570 + ABZR86_RS18090 0.44 +0.5 33,570 + ABZR86_RS18090 0.44 -2.1 33,570 + ABZR86_RS18090 0.44 -0.3 33,570 + ABZR86_RS18090 0.44 +1.3 33,570 + ABZR86_RS18090 0.44 -0.8 33,570 + ABZR86_RS18090 0.44 -3.2 33,570 + ABZR86_RS18090 0.44 +0.4 33,570 + ABZR86_RS18090 0.44 -2.1 33,570 + ABZR86_RS18090 0.44 -0.1 33,570 + ABZR86_RS18090 0.44 +0.1 33,570 + ABZR86_RS18090 0.44 -0.5 33,570 + ABZR86_RS18090 0.44 +0.4 33,571 - ABZR86_RS18090 0.44 -2.9 33,571 - ABZR86_RS18090 0.44 -1.3 33,571 - ABZR86_RS18090 0.44 -0.2 33,571 - ABZR86_RS18090 0.44 -2.3 33,571 - ABZR86_RS18090 0.44 -0.5 33,865 + ABZR86_RS18095 0.29 -0.4 33,865 + ABZR86_RS18095 0.29 -3.9 33,865 + ABZR86_RS18095 0.29 -0.2 33,865 + ABZR86_RS18095 0.29 -0.1 33,865 + ABZR86_RS18095 0.29 -1.9 33,866 - ABZR86_RS18095 0.29 +0.5 33,866 - ABZR86_RS18095 0.29 -0.7 33,958 + ABZR86_RS18095 0.43 -1.5 34,090 + ABZR86_RS18095 0.63 +1.1 34,090 + ABZR86_RS18095 0.63 +0.3 34,091 - ABZR86_RS18095 0.63 -0.8 34,365 + -0.2
Or see this region's nucleotide sequence