Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS14605 and ABZR86_RS14610 are separated by 77 nucleotides ABZR86_RS14610 and ABZR86_RS14615 are separated by 170 nucleotides ABZR86_RS14615 and ABZR86_RS14620 are separated by 484 nucleotides
ABZR86_RS14605: ABZR86_RS14605 - fimbrial protein, at 3,267,307 to 3,268,296
_RS14605
ABZR86_RS14610: ABZR86_RS14610 - conjugal transfer protein TrbN, at 3,268,374 to 3,268,553
_RS14610
ABZR86_RS14615: ABZR86_RS14615 - fimbrial protein, at 3,268,724 to 3,269,281
_RS14615
ABZR86_RS14620: ABZR86_RS14620 - response regulator transcription factor, at 3,269,766 to 3,270,401
_RS14620
Position (kb)
3268
3269
3270 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3267.845 kb on + strand, within ABZR86_RS14605 at 3267.872 kb on + strand, within ABZR86_RS14605 at 3267.872 kb on + strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.873 kb on - strand, within ABZR86_RS14605 at 3267.882 kb on - strand, within ABZR86_RS14605 at 3267.882 kb on - strand, within ABZR86_RS14605 at 3267.951 kb on - strand, within ABZR86_RS14605 at 3268.206 kb on + strand at 3268.206 kb on + strand at 3268.207 kb on - strand at 3268.208 kb on + strand at 3268.208 kb on + strand at 3268.209 kb on - strand at 3268.209 kb on - strand at 3268.236 kb on + strand at 3268.277 kb on - strand at 3268.471 kb on + strand, within ABZR86_RS14610 at 3268.472 kb on - strand, within ABZR86_RS14610 at 3268.547 kb on - strand at 3268.552 kb on + strand at 3268.552 kb on + strand at 3268.552 kb on + strand at 3268.553 kb on - strand at 3268.553 kb on - strand at 3268.731 kb on + strand at 3268.732 kb on - strand at 3268.732 kb on - strand at 3268.735 kb on - strand at 3268.735 kb on - strand at 3268.743 kb on + strand at 3268.744 kb on - strand at 3268.791 kb on + strand, within ABZR86_RS14615 at 3268.792 kb on - strand, within ABZR86_RS14615 at 3268.935 kb on - strand, within ABZR86_RS14615 at 3268.935 kb on - strand, within ABZR86_RS14615 at 3268.946 kb on - strand, within ABZR86_RS14615 at 3269.055 kb on + strand, within ABZR86_RS14615 at 3269.180 kb on - strand, within ABZR86_RS14615 at 3269.180 kb on - strand, within ABZR86_RS14615 at 3269.465 kb on + strand at 3269.466 kb on - strand at 3270.017 kb on + strand, within ABZR86_RS14620 at 3270.109 kb on + strand, within ABZR86_RS14620 at 3270.110 kb on - strand, within ABZR86_RS14620 at 3270.111 kb on + strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620 at 3270.112 kb on - strand, within ABZR86_RS14620
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,267,845 + ABZR86_RS14605 0.54 +0.5 3,267,872 + ABZR86_RS14605 0.57 +0.4 3,267,872 + ABZR86_RS14605 0.57 -0.7 3,267,873 - ABZR86_RS14605 0.57 -0.0 3,267,873 - ABZR86_RS14605 0.57 -0.6 3,267,873 - ABZR86_RS14605 0.57 +0.1 3,267,873 - ABZR86_RS14605 0.57 -3.2 3,267,882 - ABZR86_RS14605 0.58 +1.7 3,267,882 - ABZR86_RS14605 0.58 +0.5 3,267,951 - ABZR86_RS14605 0.65 +0.9 3,268,206 + -0.5 3,268,206 + -0.9 3,268,207 - -0.9 3,268,208 + +0.1 3,268,208 + -2.3 3,268,209 - -1.1 3,268,209 - -0.7 3,268,236 + +0.7 3,268,277 - -1.4 3,268,471 + ABZR86_RS14610 0.54 -1.4 3,268,472 - ABZR86_RS14610 0.54 +1.3 3,268,547 - +0.3 3,268,552 + -1.0 3,268,552 + -0.3 3,268,552 + -0.8 3,268,553 - -2.1 3,268,553 - -0.0 3,268,731 + -2.3 3,268,732 - -0.6 3,268,732 - -0.4 3,268,735 - -0.5 3,268,735 - +1.1 3,268,743 + +0.3 3,268,744 - -0.3 3,268,791 + ABZR86_RS14615 0.12 +0.2 3,268,792 - ABZR86_RS14615 0.12 -1.0 3,268,935 - ABZR86_RS14615 0.38 -0.6 3,268,935 - ABZR86_RS14615 0.38 +1.2 3,268,946 - ABZR86_RS14615 0.40 -0.4 3,269,055 + ABZR86_RS14615 0.59 -2.9 3,269,180 - ABZR86_RS14615 0.82 +0.1 3,269,180 - ABZR86_RS14615 0.82 +1.2 3,269,465 + -0.9 3,269,466 - +0.8 3,270,017 + ABZR86_RS14620 0.39 -2.3 3,270,109 + ABZR86_RS14620 0.54 -0.9 3,270,110 - ABZR86_RS14620 0.54 +0.1 3,270,111 + ABZR86_RS14620 0.54 +0.0 3,270,112 - ABZR86_RS14620 0.54 -1.0 3,270,112 - ABZR86_RS14620 0.54 +0.1 3,270,112 - ABZR86_RS14620 0.54 -0.7 3,270,112 - ABZR86_RS14620 0.54 +0.9
Or see this region's nucleotide sequence