Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS13675 and ABZR86_RS13680 are separated by 8 nucleotides ABZR86_RS13680 and ABZR86_RS13685 are separated by 7 nucleotides ABZR86_RS13685 and ABZR86_RS13690 overlap by 4 nucleotides
ABZR86_RS13675: ABZR86_RS13675 - LysM domain-containing protein, at 3,056,134 to 3,057,501
_RS13675
ABZR86_RS13680: ABZR86_RS13680 - type III secretion HpaP family protein, at 3,057,510 to 3,058,220
_RS13680
ABZR86_RS13685: ABZR86_RS13685 - hypothetical protein, at 3,058,228 to 3,058,716
_RS13685
ABZR86_RS13690: ABZR86_RS13690 - FliI/YscN family ATPase, at 3,058,713 to 3,060,062
_RS13690
Position (kb)
3058
3059 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3057.927 kb on - strand, within ABZR86_RS13680 at 3058.163 kb on + strand at 3058.163 kb on + strand at 3058.163 kb on + strand at 3058.169 kb on + strand at 3058.169 kb on + strand at 3058.169 kb on + strand at 3058.170 kb on - strand at 3058.170 kb on - strand at 3058.221 kb on - strand at 3058.221 kb on - strand at 3058.885 kb on + strand, within ABZR86_RS13690 at 3058.897 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.101 kb on + strand, within ABZR86_RS13690 at 3059.102 kb on - strand, within ABZR86_RS13690 at 3059.102 kb on - strand, within ABZR86_RS13690 at 3059.296 kb on + strand, within ABZR86_RS13690 at 3059.296 kb on + strand, within ABZR86_RS13690 at 3059.296 kb on + strand, within ABZR86_RS13690 at 3059.296 kb on + strand, within ABZR86_RS13690 at 3059.297 kb on - strand, within ABZR86_RS13690 at 3059.297 kb on - strand, within ABZR86_RS13690 at 3059.297 kb on - strand, within ABZR86_RS13690 at 3059.297 kb on - strand, within ABZR86_RS13690 at 3059.644 kb on + strand, within ABZR86_RS13690 at 3059.644 kb on + strand, within ABZR86_RS13690 at 3059.645 kb on - strand, within ABZR86_RS13690 at 3059.645 kb on - strand, within ABZR86_RS13690
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,057,927 - ABZR86_RS13680 0.59 -0.9 3,058,163 + +1.1 3,058,163 + +0.6 3,058,163 + +1.6 3,058,169 + -2.5 3,058,169 + +0.4 3,058,169 + +0.1 3,058,170 - +1.0 3,058,170 - +0.1 3,058,221 - +1.2 3,058,221 - +0.9 3,058,885 + ABZR86_RS13690 0.13 +0.5 3,058,897 + ABZR86_RS13690 0.14 +0.3 3,059,023 + ABZR86_RS13690 0.23 -1.8 3,059,023 + ABZR86_RS13690 0.23 +1.8 3,059,023 + ABZR86_RS13690 0.23 +0.2 3,059,023 + ABZR86_RS13690 0.23 +0.4 3,059,023 + ABZR86_RS13690 0.23 +0.0 3,059,023 + ABZR86_RS13690 0.23 +0.4 3,059,023 + ABZR86_RS13690 0.23 -0.2 3,059,024 - ABZR86_RS13690 0.23 +0.2 3,059,024 - ABZR86_RS13690 0.23 +1.5 3,059,024 - ABZR86_RS13690 0.23 -3.1 3,059,024 - ABZR86_RS13690 0.23 +0.0 3,059,024 - ABZR86_RS13690 0.23 -0.3 3,059,024 - ABZR86_RS13690 0.23 +1.0 3,059,024 - ABZR86_RS13690 0.23 -0.9 3,059,024 - ABZR86_RS13690 0.23 +0.1 3,059,024 - ABZR86_RS13690 0.23 -2.5 3,059,027 + ABZR86_RS13690 0.23 +0.3 3,059,027 + ABZR86_RS13690 0.23 +0.2 3,059,027 + ABZR86_RS13690 0.23 -2.6 3,059,027 + ABZR86_RS13690 0.23 -1.3 3,059,028 - ABZR86_RS13690 0.23 -0.5 3,059,028 - ABZR86_RS13690 0.23 +1.2 3,059,028 - ABZR86_RS13690 0.23 -0.3 3,059,028 - ABZR86_RS13690 0.23 -3.0 3,059,101 + ABZR86_RS13690 0.29 -0.2 3,059,102 - ABZR86_RS13690 0.29 +1.0 3,059,102 - ABZR86_RS13690 0.29 +1.7 3,059,296 + ABZR86_RS13690 0.43 +0.4 3,059,296 + ABZR86_RS13690 0.43 -0.8 3,059,296 + ABZR86_RS13690 0.43 +0.7 3,059,296 + ABZR86_RS13690 0.43 -3.2 3,059,297 - ABZR86_RS13690 0.43 -1.1 3,059,297 - ABZR86_RS13690 0.43 +0.4 3,059,297 - ABZR86_RS13690 0.43 +0.9 3,059,297 - ABZR86_RS13690 0.43 -2.0 3,059,644 + ABZR86_RS13690 0.69 -0.6 3,059,644 + ABZR86_RS13690 0.69 -1.0 3,059,645 - ABZR86_RS13690 0.69 +0.2 3,059,645 - ABZR86_RS13690 0.69 +1.0
Or see this region's nucleotide sequence