Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS13575

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS13565 and ABZR86_RS13570 overlap by 4 nucleotidesABZR86_RS13570 and ABZR86_RS13575 are separated by 71 nucleotidesABZR86_RS13575 and ABZR86_RS13580 are separated by 94 nucleotides ABZR86_RS13565: ABZR86_RS13565 - acyltransferase, at 3,037,441 to 3,038,394 _RS13565 ABZR86_RS13570: ABZR86_RS13570 - hydroxymyristoyl-ACP dehydratase, at 3,038,391 to 3,038,690 _RS13570 ABZR86_RS13575: ABZR86_RS13575 - phosphopantetheine-binding protein, at 3,038,762 to 3,039,034 _RS13575 ABZR86_RS13580: ABZR86_RS13580 - pteridine-dependent deoxygenase, at 3,039,129 to 3,040,121 _RS13580 Position (kb) 3038 3039 3040Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3038.264 kb on + strand, within ABZR86_RS13565at 3038.264 kb on + strand, within ABZR86_RS13565at 3038.264 kb on + strand, within ABZR86_RS13565at 3038.264 kb on + strand, within ABZR86_RS13565at 3038.264 kb on + strand, within ABZR86_RS13565at 3038.270 kb on + strand, within ABZR86_RS13565at 3038.270 kb on + strand, within ABZR86_RS13565at 3038.270 kb on + strand, within ABZR86_RS13565at 3038.271 kb on - strand, within ABZR86_RS13565at 3038.271 kb on - strand, within ABZR86_RS13565at 3038.318 kb on + strandat 3038.331 kb on + strandat 3038.332 kb on - strandat 3038.332 kb on - strandat 3038.677 kb on + strandat 3038.677 kb on + strandat 3038.677 kb on + strandat 3038.677 kb on + strandat 3038.678 kb on - strandat 3038.678 kb on - strandat 3038.862 kb on + strand, within ABZR86_RS13575at 3038.863 kb on - strand, within ABZR86_RS13575at 3039.056 kb on + strandat 3039.056 kb on + strandat 3039.056 kb on + strandat 3039.057 kb on - strandat 3039.057 kb on - strandat 3039.057 kb on - strandat 3039.057 kb on - strandat 3039.057 kb on - strandat 3039.094 kb on + strandat 3039.094 kb on + strandat 3039.094 kb on + strandat 3039.094 kb on + strandat 3039.094 kb on + strandat 3039.094 kb on + strandat 3039.094 kb on + strandat 3039.094 kb on + strandat 3039.095 kb on - strandat 3039.095 kb on - strandat 3039.095 kb on - strandat 3039.095 kb on - strandat 3039.095 kb on - strandat 3039.095 kb on - strandat 3039.095 kb on - strandat 3039.095 kb on - strandat 3039.193 kb on - strandat 3039.193 kb on - strandat 3039.289 kb on - strand, within ABZR86_RS13580at 3039.337 kb on + strand, within ABZR86_RS13580at 3039.337 kb on + strand, within ABZR86_RS13580at 3039.337 kb on + strand, within ABZR86_RS13580at 3039.337 kb on + strand, within ABZR86_RS13580at 3039.337 kb on + strand, within ABZR86_RS13580at 3039.337 kb on + strand, within ABZR86_RS13580at 3039.338 kb on - strand, within ABZR86_RS13580at 3039.338 kb on - strand, within ABZR86_RS13580at 3039.338 kb on - strand, within ABZR86_RS13580at 3039.537 kb on + strand, within ABZR86_RS13580at 3039.537 kb on + strand, within ABZR86_RS13580at 3039.537 kb on + strand, within ABZR86_RS13580at 3039.537 kb on + strand, within ABZR86_RS13580at 3039.537 kb on + strand, within ABZR86_RS13580at 3039.538 kb on - strand, within ABZR86_RS13580at 3039.538 kb on - strand, within ABZR86_RS13580at 3039.538 kb on - strand, within ABZR86_RS13580at 3039.579 kb on + strand, within ABZR86_RS13580at 3039.579 kb on + strand, within ABZR86_RS13580at 3039.579 kb on + strand, within ABZR86_RS13580at 3039.579 kb on + strand, within ABZR86_RS13580at 3039.579 kb on + strand, within ABZR86_RS13580at 3039.690 kb on + strand, within ABZR86_RS13580at 3039.691 kb on - strand, within ABZR86_RS13580at 3039.691 kb on - strand, within ABZR86_RS13580at 3039.691 kb on - strand, within ABZR86_RS13580at 3039.691 kb on - strand, within ABZR86_RS13580at 3039.981 kb on + strand, within ABZR86_RS13580at 3039.982 kb on - strand, within ABZR86_RS13580at 3039.982 kb on - strand, within ABZR86_RS13580at 3039.982 kb on - strand, within ABZR86_RS13580at 3039.982 kb on - strand, within ABZR86_RS13580at 3039.982 kb on - strand, within ABZR86_RS13580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,038,264 + ABZR86_RS13565 0.86 -0.3
3,038,264 + ABZR86_RS13565 0.86 -3.1
3,038,264 + ABZR86_RS13565 0.86 -0.5
3,038,264 + ABZR86_RS13565 0.86 -2.9
3,038,264 + ABZR86_RS13565 0.86 +0.2
3,038,270 + ABZR86_RS13565 0.87 +0.0
3,038,270 + ABZR86_RS13565 0.87 -1.1
3,038,270 + ABZR86_RS13565 0.87 -0.9
3,038,271 - ABZR86_RS13565 0.87 -0.6
3,038,271 - ABZR86_RS13565 0.87 +0.3
3,038,318 + +1.5
3,038,331 + +0.3
3,038,332 - +0.6
3,038,332 - -0.3
3,038,677 + +0.4
3,038,677 + +0.0
3,038,677 + +1.4
3,038,677 + +1.3
3,038,678 - +2.9
3,038,678 - +0.2
3,038,862 + ABZR86_RS13575 0.37 -0.6
3,038,863 - ABZR86_RS13575 0.37 +1.0
3,039,056 + +0.5
3,039,056 + -2.2
3,039,056 + -0.3
3,039,057 - +0.3
3,039,057 - -0.1
3,039,057 - +0.7
3,039,057 - +0.3
3,039,057 - -0.8
3,039,094 + +1.0
3,039,094 + -0.9
3,039,094 + -0.5
3,039,094 + +1.0
3,039,094 + -0.4
3,039,094 + -2.8
3,039,094 + -0.8
3,039,094 + +1.3
3,039,095 - +1.1
3,039,095 - +0.7
3,039,095 - -0.9
3,039,095 - +0.4
3,039,095 - -1.0
3,039,095 - +1.4
3,039,095 - +0.0
3,039,095 - -1.5
3,039,193 - -3.6
3,039,193 - +0.4
3,039,289 - ABZR86_RS13580 0.16 +0.5
3,039,337 + ABZR86_RS13580 0.21 -0.6
3,039,337 + ABZR86_RS13580 0.21 -2.0
3,039,337 + ABZR86_RS13580 0.21 -0.3
3,039,337 + ABZR86_RS13580 0.21 -0.2
3,039,337 + ABZR86_RS13580 0.21 -0.5
3,039,337 + ABZR86_RS13580 0.21 +0.1
3,039,338 - ABZR86_RS13580 0.21 -0.2
3,039,338 - ABZR86_RS13580 0.21 +0.2
3,039,338 - ABZR86_RS13580 0.21 +1.5
3,039,537 + ABZR86_RS13580 0.41 -0.7
3,039,537 + ABZR86_RS13580 0.41 +2.0
3,039,537 + ABZR86_RS13580 0.41 +1.4
3,039,537 + ABZR86_RS13580 0.41 +1.3
3,039,537 + ABZR86_RS13580 0.41 -0.6
3,039,538 - ABZR86_RS13580 0.41 +0.1
3,039,538 - ABZR86_RS13580 0.41 +0.3
3,039,538 - ABZR86_RS13580 0.41 +0.3
3,039,579 + ABZR86_RS13580 0.45 -0.0
3,039,579 + ABZR86_RS13580 0.45 -0.2
3,039,579 + ABZR86_RS13580 0.45 +0.2
3,039,579 + ABZR86_RS13580 0.45 -0.7
3,039,579 + ABZR86_RS13580 0.45 +2.0
3,039,690 + ABZR86_RS13580 0.56 -2.7
3,039,691 - ABZR86_RS13580 0.57 +1.2
3,039,691 - ABZR86_RS13580 0.57 -0.7
3,039,691 - ABZR86_RS13580 0.57 +0.7
3,039,691 - ABZR86_RS13580 0.57 -1.1
3,039,981 + ABZR86_RS13580 0.86 +0.8
3,039,982 - ABZR86_RS13580 0.86 -0.3
3,039,982 - ABZR86_RS13580 0.86 -2.7
3,039,982 - ABZR86_RS13580 0.86 +2.0
3,039,982 - ABZR86_RS13580 0.86 -0.4
3,039,982 - ABZR86_RS13580 0.86 +0.6

Or see this region's nucleotide sequence