Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09700

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09695 and ABZR86_RS09700 are separated by 254 nucleotidesABZR86_RS09700 and ABZR86_RS09705 are separated by 58 nucleotidesABZR86_RS09705 and ABZR86_RS09710 are separated by 87 nucleotides ABZR86_RS09695: ABZR86_RS09695 - threonine--tRNA ligase, at 2,158,145 to 2,160,046 _RS09695 ABZR86_RS09700: ABZR86_RS09700 - NAD-dependent epimerase, at 2,160,301 to 2,161,311 _RS09700 ABZR86_RS09705: ABZR86_RS09705 - CopD family protein, at 2,161,370 to 2,161,816 _RS09705 ABZR86_RS09710: ABZR86_RS09710 - flagellar basal body P-ring formation chaperone FlgA, at 2,161,904 to 2,162,647 _RS09710 Position (kb) 2160 2161 2162Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2160.135 kb on - strandat 2160.135 kb on - strandat 2160.135 kb on - strandat 2160.267 kb on + strandat 2160.292 kb on + strandat 2160.406 kb on + strand, within ABZR86_RS09700at 2160.406 kb on + strand, within ABZR86_RS09700at 2160.409 kb on + strand, within ABZR86_RS09700at 2160.409 kb on + strand, within ABZR86_RS09700at 2160.409 kb on + strand, within ABZR86_RS09700at 2160.410 kb on - strand, within ABZR86_RS09700at 2160.410 kb on - strand, within ABZR86_RS09700at 2160.410 kb on - strand, within ABZR86_RS09700at 2160.410 kb on - strand, within ABZR86_RS09700at 2160.463 kb on + strand, within ABZR86_RS09700at 2160.464 kb on - strand, within ABZR86_RS09700at 2160.464 kb on - strand, within ABZR86_RS09700at 2160.572 kb on - strand, within ABZR86_RS09700at 2160.595 kb on + strand, within ABZR86_RS09700at 2160.595 kb on + strand, within ABZR86_RS09700at 2160.595 kb on + strand, within ABZR86_RS09700at 2160.595 kb on + strand, within ABZR86_RS09700at 2160.596 kb on - strand, within ABZR86_RS09700at 2160.596 kb on - strand, within ABZR86_RS09700at 2160.596 kb on - strand, within ABZR86_RS09700at 2160.596 kb on - strand, within ABZR86_RS09700at 2160.670 kb on + strand, within ABZR86_RS09700at 2160.670 kb on + strand, within ABZR86_RS09700at 2160.670 kb on + strand, within ABZR86_RS09700at 2160.671 kb on - strand, within ABZR86_RS09700at 2160.671 kb on - strand, within ABZR86_RS09700at 2160.691 kb on + strand, within ABZR86_RS09700at 2160.792 kb on + strand, within ABZR86_RS09700at 2160.793 kb on - strand, within ABZR86_RS09700at 2160.793 kb on - strand, within ABZR86_RS09700at 2160.796 kb on + strand, within ABZR86_RS09700at 2160.796 kb on + strand, within ABZR86_RS09700at 2160.796 kb on + strand, within ABZR86_RS09700at 2160.796 kb on + strand, within ABZR86_RS09700at 2160.796 kb on + strand, within ABZR86_RS09700at 2160.796 kb on + strand, within ABZR86_RS09700at 2160.796 kb on + strand, within ABZR86_RS09700at 2160.796 kb on + strand, within ABZR86_RS09700at 2160.796 kb on + strand, within ABZR86_RS09700at 2160.797 kb on - strand, within ABZR86_RS09700at 2160.797 kb on - strand, within ABZR86_RS09700at 2160.797 kb on - strand, within ABZR86_RS09700at 2160.797 kb on - strand, within ABZR86_RS09700at 2160.797 kb on - strand, within ABZR86_RS09700at 2160.847 kb on + strand, within ABZR86_RS09700at 2160.847 kb on + strand, within ABZR86_RS09700at 2160.848 kb on - strand, within ABZR86_RS09700at 2160.848 kb on - strand, within ABZR86_RS09700at 2160.848 kb on - strand, within ABZR86_RS09700at 2160.848 kb on - strand, within ABZR86_RS09700at 2160.848 kb on - strand, within ABZR86_RS09700at 2160.848 kb on - strand, within ABZR86_RS09700at 2160.958 kb on + strand, within ABZR86_RS09700at 2160.958 kb on + strand, within ABZR86_RS09700at 2160.958 kb on + strand, within ABZR86_RS09700at 2160.958 kb on + strand, within ABZR86_RS09700at 2160.958 kb on + strand, within ABZR86_RS09700at 2160.958 kb on + strand, within ABZR86_RS09700at 2160.958 kb on + strand, within ABZR86_RS09700at 2160.959 kb on - strand, within ABZR86_RS09700at 2160.959 kb on - strand, within ABZR86_RS09700at 2160.959 kb on - strand, within ABZR86_RS09700at 2160.960 kb on + strand, within ABZR86_RS09700at 2160.960 kb on + strand, within ABZR86_RS09700at 2160.961 kb on - strand, within ABZR86_RS09700at 2160.961 kb on - strand, within ABZR86_RS09700at 2160.961 kb on - strand, within ABZR86_RS09700at 2161.075 kb on + strand, within ABZR86_RS09700at 2161.075 kb on + strand, within ABZR86_RS09700at 2161.075 kb on + strand, within ABZR86_RS09700at 2161.075 kb on + strand, within ABZR86_RS09700at 2161.076 kb on - strand, within ABZR86_RS09700at 2161.076 kb on - strand, within ABZR86_RS09700at 2161.294 kb on + strandat 2161.294 kb on + strandat 2161.295 kb on - strandat 2161.323 kb on + strandat 2161.324 kb on - strandat 2161.324 kb on - strandat 2161.324 kb on - strandat 2161.324 kb on - strandat 2161.853 kb on + strandat 2161.853 kb on + strandat 2161.854 kb on - strandat 2161.972 kb on + strandat 2161.972 kb on + strandat 2162.306 kb on - strand, within ABZR86_RS09710

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,160,135 - -1.8
2,160,135 - +2.1
2,160,135 - -0.7
2,160,267 + -2.6
2,160,292 + +1.1
2,160,406 + ABZR86_RS09700 0.10 -0.0
2,160,406 + ABZR86_RS09700 0.10 +0.2
2,160,409 + ABZR86_RS09700 0.11 -0.5
2,160,409 + ABZR86_RS09700 0.11 -1.4
2,160,409 + ABZR86_RS09700 0.11 -4.2
2,160,410 - ABZR86_RS09700 0.11 -2.7
2,160,410 - ABZR86_RS09700 0.11 -1.1
2,160,410 - ABZR86_RS09700 0.11 -0.2
2,160,410 - ABZR86_RS09700 0.11 +0.3
2,160,463 + ABZR86_RS09700 0.16 +0.2
2,160,464 - ABZR86_RS09700 0.16 +0.0
2,160,464 - ABZR86_RS09700 0.16 -3.1
2,160,572 - ABZR86_RS09700 0.27 +0.1
2,160,595 + ABZR86_RS09700 0.29 +0.5
2,160,595 + ABZR86_RS09700 0.29 -1.4
2,160,595 + ABZR86_RS09700 0.29 +1.1
2,160,595 + ABZR86_RS09700 0.29 -2.7
2,160,596 - ABZR86_RS09700 0.29 -0.2
2,160,596 - ABZR86_RS09700 0.29 -1.4
2,160,596 - ABZR86_RS09700 0.29 +1.5
2,160,596 - ABZR86_RS09700 0.29 +0.9
2,160,670 + ABZR86_RS09700 0.36 +0.4
2,160,670 + ABZR86_RS09700 0.36 -0.8
2,160,670 + ABZR86_RS09700 0.36 -0.4
2,160,671 - ABZR86_RS09700 0.37 +0.0
2,160,671 - ABZR86_RS09700 0.37 -0.3
2,160,691 + ABZR86_RS09700 0.39 +1.1
2,160,792 + ABZR86_RS09700 0.49 -0.8
2,160,793 - ABZR86_RS09700 0.49 -0.1
2,160,793 - ABZR86_RS09700 0.49 +0.3
2,160,796 + ABZR86_RS09700 0.49 +0.9
2,160,796 + ABZR86_RS09700 0.49 -0.2
2,160,796 + ABZR86_RS09700 0.49 +0.2
2,160,796 + ABZR86_RS09700 0.49 -3.3
2,160,796 + ABZR86_RS09700 0.49 -0.1
2,160,796 + ABZR86_RS09700 0.49 +0.4
2,160,796 + ABZR86_RS09700 0.49 -0.8
2,160,796 + ABZR86_RS09700 0.49 -0.7
2,160,796 + ABZR86_RS09700 0.49 +0.4
2,160,797 - ABZR86_RS09700 0.49 +3.1
2,160,797 - ABZR86_RS09700 0.49 -0.5
2,160,797 - ABZR86_RS09700 0.49 +0.8
2,160,797 - ABZR86_RS09700 0.49 -4.3
2,160,797 - ABZR86_RS09700 0.49 -0.6
2,160,847 + ABZR86_RS09700 0.54 -0.4
2,160,847 + ABZR86_RS09700 0.54 -0.4
2,160,848 - ABZR86_RS09700 0.54 +0.4
2,160,848 - ABZR86_RS09700 0.54 -0.1
2,160,848 - ABZR86_RS09700 0.54 -0.6
2,160,848 - ABZR86_RS09700 0.54 +0.5
2,160,848 - ABZR86_RS09700 0.54 +0.8
2,160,848 - ABZR86_RS09700 0.54 -0.7
2,160,958 + ABZR86_RS09700 0.65 -2.5
2,160,958 + ABZR86_RS09700 0.65 -0.8
2,160,958 + ABZR86_RS09700 0.65 -4.4
2,160,958 + ABZR86_RS09700 0.65 +0.0
2,160,958 + ABZR86_RS09700 0.65 +1.1
2,160,958 + ABZR86_RS09700 0.65 -0.6
2,160,958 + ABZR86_RS09700 0.65 +0.3
2,160,959 - ABZR86_RS09700 0.65 -0.4
2,160,959 - ABZR86_RS09700 0.65 -2.4
2,160,959 - ABZR86_RS09700 0.65 -0.3
2,160,960 + ABZR86_RS09700 0.65 -1.2
2,160,960 + ABZR86_RS09700 0.65 -1.0
2,160,961 - ABZR86_RS09700 0.65 -1.2
2,160,961 - ABZR86_RS09700 0.65 +0.8
2,160,961 - ABZR86_RS09700 0.65 -0.4
2,161,075 + ABZR86_RS09700 0.77 -2.8
2,161,075 + ABZR86_RS09700 0.77 -0.3
2,161,075 + ABZR86_RS09700 0.77 +1.2
2,161,075 + ABZR86_RS09700 0.77 +0.2
2,161,076 - ABZR86_RS09700 0.77 +0.7
2,161,076 - ABZR86_RS09700 0.77 -0.3
2,161,294 + +0.1
2,161,294 + +0.4
2,161,295 - +1.5
2,161,323 + -0.1
2,161,324 - -0.0
2,161,324 - -0.6
2,161,324 - +0.1
2,161,324 - -0.6
2,161,853 + +0.2
2,161,853 + -0.7
2,161,854 - +0.3
2,161,972 + -1.2
2,161,972 + +0.4
2,162,306 - ABZR86_RS09710 0.54 -1.3

Or see this region's nucleotide sequence