Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09200

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09195 and ABZR86_RS09200 are separated by 33 nucleotidesABZR86_RS09200 and ABZR86_RS09205 are separated by 37 nucleotides ABZR86_RS09195: ABZR86_RS09195 - PilC/PilY family type IV pilus protein, at 2,043,915 to 2,048,165 _RS09195 ABZR86_RS09200: ABZR86_RS09200 - PilX N-terminal domain-containing pilus assembly protein, at 2,048,199 to 2,048,864 _RS09200 ABZR86_RS09205: ABZR86_RS09205 - PilW family protein, at 2,048,902 to 2,050,296 _RS09205 Position (kb) 2048 2049Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2047.237 kb on + strand, within ABZR86_RS09195at 2047.237 kb on + strand, within ABZR86_RS09195at 2047.273 kb on + strand, within ABZR86_RS09195at 2047.273 kb on + strand, within ABZR86_RS09195at 2047.273 kb on + strand, within ABZR86_RS09195at 2047.274 kb on - strand, within ABZR86_RS09195at 2047.274 kb on - strand, within ABZR86_RS09195at 2047.318 kb on + strand, within ABZR86_RS09195at 2047.319 kb on - strand, within ABZR86_RS09195at 2047.319 kb on - strand, within ABZR86_RS09195at 2047.321 kb on + strand, within ABZR86_RS09195at 2047.321 kb on + strand, within ABZR86_RS09195at 2047.322 kb on - strand, within ABZR86_RS09195at 2047.369 kb on + strand, within ABZR86_RS09195at 2047.369 kb on + strand, within ABZR86_RS09195at 2047.614 kb on - strand, within ABZR86_RS09195at 2047.621 kb on + strand, within ABZR86_RS09195at 2047.724 kb on + strand, within ABZR86_RS09195at 2047.724 kb on + strand, within ABZR86_RS09195at 2047.724 kb on + strand, within ABZR86_RS09195at 2047.725 kb on - strand, within ABZR86_RS09195at 2047.725 kb on - strand, within ABZR86_RS09195at 2047.725 kb on - strand, within ABZR86_RS09195at 2047.751 kb on - strandat 2047.768 kb on + strandat 2047.768 kb on + strandat 2047.769 kb on - strandat 2047.769 kb on - strandat 2047.771 kb on + strandat 2047.771 kb on + strandat 2047.771 kb on + strandat 2047.771 kb on + strandat 2047.772 kb on - strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.895 kb on - strandat 2047.895 kb on - strandat 2047.895 kb on - strandat 2047.937 kb on + strandat 2047.938 kb on - strandat 2048.159 kb on + strandat 2048.160 kb on - strandat 2048.186 kb on - strandat 2048.281 kb on + strand, within ABZR86_RS09200at 2048.395 kb on + strand, within ABZR86_RS09200at 2048.396 kb on - strand, within ABZR86_RS09200at 2048.476 kb on + strand, within ABZR86_RS09200at 2048.477 kb on - strand, within ABZR86_RS09200at 2048.546 kb on - strand, within ABZR86_RS09200at 2048.556 kb on - strand, within ABZR86_RS09200at 2048.857 kb on + strandat 2048.857 kb on + strandat 2048.857 kb on + strandat 2048.858 kb on - strandat 2048.858 kb on - strandat 2048.878 kb on + strandat 2048.878 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.036 kb on - strandat 2049.036 kb on - strandat 2049.041 kb on + strandat 2049.041 kb on + strandat 2049.041 kb on + strandat 2049.041 kb on + strandat 2049.068 kb on + strand, within ABZR86_RS09205at 2049.068 kb on + strand, within ABZR86_RS09205at 2049.069 kb on - strand, within ABZR86_RS09205at 2049.069 kb on - strand, within ABZR86_RS09205at 2049.212 kb on + strand, within ABZR86_RS09205at 2049.212 kb on + strand, within ABZR86_RS09205at 2049.212 kb on + strand, within ABZR86_RS09205at 2049.213 kb on - strand, within ABZR86_RS09205at 2049.213 kb on - strand, within ABZR86_RS09205at 2049.213 kb on - strand, within ABZR86_RS09205at 2049.401 kb on + strand, within ABZR86_RS09205at 2049.402 kb on - strand, within ABZR86_RS09205at 2049.484 kb on - strand, within ABZR86_RS09205at 2049.484 kb on - strand, within ABZR86_RS09205at 2049.716 kb on + strand, within ABZR86_RS09205

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,047,237 + ABZR86_RS09195 0.78 -0.6
2,047,237 + ABZR86_RS09195 0.78 -1.2
2,047,273 + ABZR86_RS09195 0.79 -0.6
2,047,273 + ABZR86_RS09195 0.79 -1.3
2,047,273 + ABZR86_RS09195 0.79 +0.4
2,047,274 - ABZR86_RS09195 0.79 +0.0
2,047,274 - ABZR86_RS09195 0.79 -0.1
2,047,318 + ABZR86_RS09195 0.80 -1.4
2,047,319 - ABZR86_RS09195 0.80 +0.2
2,047,319 - ABZR86_RS09195 0.80 +0.7
2,047,321 + ABZR86_RS09195 0.80 +0.1
2,047,321 + ABZR86_RS09195 0.80 +0.7
2,047,322 - ABZR86_RS09195 0.80 -0.2
2,047,369 + ABZR86_RS09195 0.81 -0.5
2,047,369 + ABZR86_RS09195 0.81 +2.3
2,047,614 - ABZR86_RS09195 0.87 -0.9
2,047,621 + ABZR86_RS09195 0.87 +1.4
2,047,724 + ABZR86_RS09195 0.90 +0.3
2,047,724 + ABZR86_RS09195 0.90 -2.2
2,047,724 + ABZR86_RS09195 0.90 +0.6
2,047,725 - ABZR86_RS09195 0.90 +0.4
2,047,725 - ABZR86_RS09195 0.90 +0.6
2,047,725 - ABZR86_RS09195 0.90 +0.7
2,047,751 - +0.6
2,047,768 + -1.9
2,047,768 + +2.2
2,047,769 - -0.1
2,047,769 - +0.4
2,047,771 + +1.3
2,047,771 + +0.5
2,047,771 + +0.5
2,047,771 + +0.4
2,047,772 - -2.3
2,047,894 + +0.1
2,047,894 + +1.3
2,047,894 + +0.9
2,047,894 + -0.1
2,047,894 + -0.8
2,047,894 + -1.0
2,047,894 + +0.3
2,047,894 + +1.3
2,047,895 - -2.8
2,047,895 - -0.0
2,047,895 - -0.1
2,047,937 + +0.8
2,047,938 - -1.2
2,048,159 + -1.1
2,048,160 - -1.5
2,048,186 - +0.4
2,048,281 + ABZR86_RS09200 0.12 -0.5
2,048,395 + ABZR86_RS09200 0.29 -0.4
2,048,396 - ABZR86_RS09200 0.30 +0.4
2,048,476 + ABZR86_RS09200 0.42 +1.1
2,048,477 - ABZR86_RS09200 0.42 +0.1
2,048,546 - ABZR86_RS09200 0.52 +1.3
2,048,556 - ABZR86_RS09200 0.54 -3.1
2,048,857 + -3.1
2,048,857 + -0.2
2,048,857 + +1.1
2,048,858 - -0.2
2,048,858 - -2.3
2,048,878 + -1.3
2,048,878 + +0.1
2,049,035 + -1.6
2,049,035 + +1.7
2,049,035 + +2.2
2,049,035 + +0.0
2,049,035 + -2.3
2,049,036 - -1.3
2,049,036 - -1.9
2,049,041 + +1.0
2,049,041 + -0.5
2,049,041 + +0.1
2,049,041 + -1.1
2,049,068 + ABZR86_RS09205 0.12 -0.9
2,049,068 + ABZR86_RS09205 0.12 +0.2
2,049,069 - ABZR86_RS09205 0.12 +0.5
2,049,069 - ABZR86_RS09205 0.12 -1.6
2,049,212 + ABZR86_RS09205 0.22 -1.4
2,049,212 + ABZR86_RS09205 0.22 +0.3
2,049,212 + ABZR86_RS09205 0.22 +0.4
2,049,213 - ABZR86_RS09205 0.22 +0.1
2,049,213 - ABZR86_RS09205 0.22 -0.5
2,049,213 - ABZR86_RS09205 0.22 +0.4
2,049,401 + ABZR86_RS09205 0.36 +1.5
2,049,402 - ABZR86_RS09205 0.36 -2.0
2,049,484 - ABZR86_RS09205 0.42 -1.2
2,049,484 - ABZR86_RS09205 0.42 +0.4
2,049,716 + ABZR86_RS09205 0.58 -3.3

Or see this region's nucleotide sequence