Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS07510 and ABZR86_RS07515 are separated by 9 nucleotides ABZR86_RS07515 and ABZR86_RS07520 are separated by 222 nucleotides
ABZR86_RS07510: ABZR86_RS07510 - diguanylate cyclase, at 1,654,895 to 1,656,574
_RS07510
ABZR86_RS07515: ABZR86_RS07515 - Ivy family c-type lysozyme inhibitor, at 1,656,584 to 1,657,138
_RS07515
ABZR86_RS07520: ABZR86_RS07520 - thiamine pyrophosphate-dependent enzyme, at 1,657,361 to 1,659,628
_RS07520
Position (kb)
1656
1657
1658 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1655.785 kb on - strand, within ABZR86_RS07510 at 1656.470 kb on + strand at 1656.470 kb on + strand at 1656.470 kb on + strand at 1656.501 kb on + strand at 1656.597 kb on + strand at 1656.597 kb on + strand at 1656.597 kb on + strand at 1656.597 kb on + strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.598 kb on - strand at 1656.847 kb on + strand, within ABZR86_RS07515 at 1656.847 kb on + strand, within ABZR86_RS07515 at 1656.848 kb on - strand, within ABZR86_RS07515 at 1656.943 kb on - strand, within ABZR86_RS07515 at 1656.943 kb on - strand, within ABZR86_RS07515 at 1657.183 kb on - strand at 1657.257 kb on + strand at 1657.258 kb on - strand at 1657.343 kb on + strand at 1657.343 kb on + strand at 1657.343 kb on + strand at 1657.344 kb on - strand at 1657.344 kb on - strand at 1657.344 kb on - strand at 1657.363 kb on - strand at 1657.363 kb on - strand at 1657.440 kb on + strand at 1657.440 kb on + strand at 1657.440 kb on + strand at 1657.440 kb on + strand at 1657.445 kb on - strand at 1657.445 kb on - strand at 1657.737 kb on + strand, within ABZR86_RS07520 at 1657.738 kb on - strand, within ABZR86_RS07520 at 1657.739 kb on + strand, within ABZR86_RS07520 at 1657.740 kb on - strand, within ABZR86_RS07520 at 1657.833 kb on + strand, within ABZR86_RS07520 at 1657.833 kb on + strand, within ABZR86_RS07520 at 1657.833 kb on + strand, within ABZR86_RS07520 at 1657.834 kb on - strand, within ABZR86_RS07520 at 1657.834 kb on - strand, within ABZR86_RS07520 at 1657.834 kb on - strand, within ABZR86_RS07520 at 1657.834 kb on - strand, within ABZR86_RS07520 at 1657.834 kb on - strand, within ABZR86_RS07520 at 1657.834 kb on - strand, within ABZR86_RS07520 at 1657.862 kb on + strand, within ABZR86_RS07520 at 1657.957 kb on + strand, within ABZR86_RS07520 at 1658.125 kb on - strand, within ABZR86_RS07520 at 1658.134 kb on - strand, within ABZR86_RS07520
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,655,785 - ABZR86_RS07510 0.53 +0.5 1,656,470 + -0.2 1,656,470 + +1.1 1,656,470 + +1.2 1,656,501 + -3.1 1,656,597 + +0.2 1,656,597 + -2.8 1,656,597 + +1.8 1,656,597 + +1.1 1,656,598 - +0.1 1,656,598 - -0.4 1,656,598 - -1.4 1,656,598 - +1.2 1,656,598 - -1.1 1,656,598 - +0.2 1,656,598 - +1.1 1,656,847 + ABZR86_RS07515 0.47 -0.5 1,656,847 + ABZR86_RS07515 0.47 +1.9 1,656,848 - ABZR86_RS07515 0.48 +1.5 1,656,943 - ABZR86_RS07515 0.65 -0.4 1,656,943 - ABZR86_RS07515 0.65 +1.6 1,657,183 - -0.4 1,657,257 + -3.4 1,657,258 - +0.5 1,657,343 + +0.1 1,657,343 + -0.1 1,657,343 + +1.1 1,657,344 - -1.4 1,657,344 - +0.5 1,657,344 - +0.6 1,657,363 - -2.2 1,657,363 - -0.0 1,657,440 + -0.5 1,657,440 + +0.2 1,657,440 + +1.2 1,657,440 + +0.3 1,657,445 - +2.2 1,657,445 - -1.0 1,657,737 + ABZR86_RS07520 0.17 +0.5 1,657,738 - ABZR86_RS07520 0.17 +0.4 1,657,739 + ABZR86_RS07520 0.17 -2.0 1,657,740 - ABZR86_RS07520 0.17 -3.3 1,657,833 + ABZR86_RS07520 0.21 +0.7 1,657,833 + ABZR86_RS07520 0.21 +0.3 1,657,833 + ABZR86_RS07520 0.21 +1.6 1,657,834 - ABZR86_RS07520 0.21 +2.1 1,657,834 - ABZR86_RS07520 0.21 -0.5 1,657,834 - ABZR86_RS07520 0.21 +0.8 1,657,834 - ABZR86_RS07520 0.21 +0.6 1,657,834 - ABZR86_RS07520 0.21 +0.9 1,657,834 - ABZR86_RS07520 0.21 +2.0 1,657,862 + ABZR86_RS07520 0.22 -3.5 1,657,957 + ABZR86_RS07520 0.26 -1.2 1,658,125 - ABZR86_RS07520 0.34 -1.6 1,658,134 - ABZR86_RS07520 0.34 -0.3
Or see this region's nucleotide sequence