Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05015 and ABZR86_RS05020 are separated by 28 nucleotides ABZR86_RS05020 and ABZR86_RS05025 are separated by 0 nucleotides ABZR86_RS05025 and ABZR86_RS05030 are separated by 160 nucleotides
ABZR86_RS05015: ABZR86_RS05015 - substrate-binding domain-containing protein, at 1,121,950 to 1,123,206
_RS05015
ABZR86_RS05020: ABZR86_RS05020 - hypothetical protein, at 1,123,235 to 1,123,450
_RS05020
ABZR86_RS05025: ABZR86_RS05025 - hypothetical protein, at 1,123,451 to 1,123,798
_RS05025
ABZR86_RS05030: ABZR86_RS05030 - filamentous haemagglutinin family protein, at 1,123,959 to 1,137,062
_RS05030
Position (kb)
1123
1124 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1122.498 kb on - strand, within ABZR86_RS05015 at 1122.498 kb on - strand, within ABZR86_RS05015 at 1122.617 kb on + strand, within ABZR86_RS05015 at 1122.618 kb on - strand, within ABZR86_RS05015 at 1122.618 kb on - strand, within ABZR86_RS05015 at 1122.821 kb on + strand, within ABZR86_RS05015 at 1122.821 kb on + strand, within ABZR86_RS05015 at 1122.821 kb on + strand, within ABZR86_RS05015 at 1122.821 kb on + strand, within ABZR86_RS05015 at 1122.821 kb on + strand, within ABZR86_RS05015 at 1122.821 kb on + strand, within ABZR86_RS05015 at 1122.822 kb on - strand, within ABZR86_RS05015 at 1122.822 kb on - strand, within ABZR86_RS05015 at 1122.822 kb on - strand, within ABZR86_RS05015 at 1122.830 kb on + strand, within ABZR86_RS05015 at 1123.011 kb on - strand, within ABZR86_RS05015 at 1123.040 kb on + strand, within ABZR86_RS05015 at 1123.040 kb on + strand, within ABZR86_RS05015 at 1123.040 kb on + strand, within ABZR86_RS05015 at 1123.041 kb on - strand, within ABZR86_RS05015 at 1123.041 kb on - strand, within ABZR86_RS05015 at 1123.041 kb on - strand, within ABZR86_RS05015 at 1123.041 kb on - strand, within ABZR86_RS05015 at 1123.241 kb on + strand at 1123.242 kb on - strand at 1123.242 kb on - strand at 1123.416 kb on + strand, within ABZR86_RS05020 at 1123.416 kb on + strand, within ABZR86_RS05020 at 1123.417 kb on - strand, within ABZR86_RS05020 at 1123.861 kb on - strand at 1124.060 kb on - strand at 1124.060 kb on - strand at 1124.389 kb on + strand at 1124.389 kb on + strand at 1124.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,122,498 - ABZR86_RS05015 0.44 +0.5 1,122,498 - ABZR86_RS05015 0.44 -0.8 1,122,617 + ABZR86_RS05015 0.53 -0.1 1,122,618 - ABZR86_RS05015 0.53 +1.7 1,122,618 - ABZR86_RS05015 0.53 +0.3 1,122,821 + ABZR86_RS05015 0.69 -0.7 1,122,821 + ABZR86_RS05015 0.69 -1.7 1,122,821 + ABZR86_RS05015 0.69 -0.2 1,122,821 + ABZR86_RS05015 0.69 +1.4 1,122,821 + ABZR86_RS05015 0.69 +0.1 1,122,821 + ABZR86_RS05015 0.69 +1.3 1,122,822 - ABZR86_RS05015 0.69 +0.1 1,122,822 - ABZR86_RS05015 0.69 +1.4 1,122,822 - ABZR86_RS05015 0.69 +0.6 1,122,830 + ABZR86_RS05015 0.70 +0.3 1,123,011 - ABZR86_RS05015 0.84 -0.1 1,123,040 + ABZR86_RS05015 0.87 +1.3 1,123,040 + ABZR86_RS05015 0.87 +0.1 1,123,040 + ABZR86_RS05015 0.87 -0.8 1,123,041 - ABZR86_RS05015 0.87 -0.8 1,123,041 - ABZR86_RS05015 0.87 +0.5 1,123,041 - ABZR86_RS05015 0.87 -0.2 1,123,041 - ABZR86_RS05015 0.87 +0.3 1,123,241 + +1.5 1,123,242 - -0.2 1,123,242 - -2.2 1,123,416 + ABZR86_RS05020 0.84 -2.6 1,123,416 + ABZR86_RS05020 0.84 -0.3 1,123,417 - ABZR86_RS05020 0.84 -0.4 1,123,861 - -3.9 1,124,060 - +0.5 1,124,060 - +1.5 1,124,389 + -0.8 1,124,389 + +0.1 1,124,390 - +0.6
Or see this region's nucleotide sequence