Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04230

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS04220 and ABZR86_RS04225 are separated by 92 nucleotidesABZR86_RS04225 and ABZR86_RS04230 are separated by 512 nucleotidesABZR86_RS04230 and ABZR86_RS04235 are separated by 13 nucleotides ABZR86_RS04220: ABZR86_RS04220 - amino acid adenylation domain-containing protein, at 947,181 to 950,255 _RS04220 ABZR86_RS04225: ABZR86_RS04225 - MbtH family protein, at 950,348 to 950,566 _RS04225 ABZR86_RS04230: ABZR86_RS04230 - amidohydrolase family protein, at 951,079 to 952,584 _RS04230 ABZR86_RS04235: ABZR86_RS04235 - LysR family transcriptional regulator, at 952,598 to 953,491 _RS04235 Position (kb) 951 952 953Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 950.101 kb on + strandat 950.227 kb on + strandat 950.227 kb on + strandat 950.227 kb on + strandat 950.228 kb on - strandat 950.349 kb on + strandat 950.395 kb on + strand, within ABZR86_RS04225at 950.395 kb on + strand, within ABZR86_RS04225at 950.395 kb on + strand, within ABZR86_RS04225at 950.396 kb on - strand, within ABZR86_RS04225at 950.407 kb on + strand, within ABZR86_RS04225at 950.407 kb on + strand, within ABZR86_RS04225at 950.408 kb on - strand, within ABZR86_RS04225at 950.418 kb on + strand, within ABZR86_RS04225at 950.418 kb on + strand, within ABZR86_RS04225at 950.418 kb on + strand, within ABZR86_RS04225at 950.418 kb on + strand, within ABZR86_RS04225at 950.418 kb on + strand, within ABZR86_RS04225at 950.418 kb on + strand, within ABZR86_RS04225at 950.418 kb on + strand, within ABZR86_RS04225at 950.418 kb on + strand, within ABZR86_RS04225at 950.419 kb on - strand, within ABZR86_RS04225at 950.419 kb on - strand, within ABZR86_RS04225at 950.419 kb on - strand, within ABZR86_RS04225at 950.419 kb on - strand, within ABZR86_RS04225at 950.419 kb on - strand, within ABZR86_RS04225at 950.419 kb on - strand, within ABZR86_RS04225at 950.419 kb on - strand, within ABZR86_RS04225at 950.617 kb on + strandat 950.617 kb on + strandat 950.719 kb on - strandat 950.740 kb on + strandat 950.741 kb on - strandat 950.743 kb on + strandat 950.743 kb on + strandat 950.743 kb on + strandat 950.743 kb on + strandat 950.743 kb on + strandat 950.744 kb on - strandat 950.744 kb on - strandat 950.744 kb on - strandat 950.765 kb on + strandat 950.765 kb on + strandat 950.766 kb on - strandat 950.826 kb on + strandat 950.826 kb on + strandat 950.826 kb on + strandat 950.826 kb on + strandat 950.827 kb on - strandat 950.878 kb on + strandat 950.911 kb on - strandat 950.911 kb on - strandat 950.962 kb on + strandat 950.963 kb on - strandat 951.090 kb on + strandat 951.090 kb on + strandat 951.090 kb on + strandat 951.090 kb on + strandat 951.093 kb on + strandat 951.093 kb on + strandat 951.093 kb on + strandat 951.093 kb on + strandat 951.094 kb on - strandat 951.094 kb on - strandat 951.147 kb on + strandat 951.184 kb on + strandat 951.185 kb on - strandat 951.409 kb on + strand, within ABZR86_RS04230at 951.475 kb on + strand, within ABZR86_RS04230at 951.475 kb on + strand, within ABZR86_RS04230at 951.476 kb on - strand, within ABZR86_RS04230at 951.498 kb on + strand, within ABZR86_RS04230at 951.499 kb on - strand, within ABZR86_RS04230at 951.499 kb on - strand, within ABZR86_RS04230at 951.499 kb on - strand, within ABZR86_RS04230at 951.504 kb on + strand, within ABZR86_RS04230at 951.505 kb on - strand, within ABZR86_RS04230at 951.515 kb on + strand, within ABZR86_RS04230at 951.516 kb on - strand, within ABZR86_RS04230at 951.516 kb on - strand, within ABZR86_RS04230at 951.516 kb on - strand, within ABZR86_RS04230at 951.516 kb on - strand, within ABZR86_RS04230at 951.760 kb on + strand, within ABZR86_RS04230at 951.761 kb on - strand, within ABZR86_RS04230at 951.761 kb on - strand, within ABZR86_RS04230at 951.822 kb on - strand, within ABZR86_RS04230at 951.891 kb on + strand, within ABZR86_RS04230at 951.993 kb on - strand, within ABZR86_RS04230at 951.993 kb on - strand, within ABZR86_RS04230at 951.993 kb on - strand, within ABZR86_RS04230at 951.996 kb on - strand, within ABZR86_RS04230at 951.996 kb on - strand, within ABZR86_RS04230at 951.996 kb on - strand, within ABZR86_RS04230at 952.000 kb on - strand, within ABZR86_RS04230at 952.000 kb on - strand, within ABZR86_RS04230at 952.000 kb on - strand, within ABZR86_RS04230at 952.012 kb on + strand, within ABZR86_RS04230at 952.097 kb on + strand, within ABZR86_RS04230at 952.097 kb on + strand, within ABZR86_RS04230at 952.411 kb on + strand, within ABZR86_RS04230at 952.411 kb on + strand, within ABZR86_RS04230at 952.411 kb on + strand, within ABZR86_RS04230at 952.411 kb on + strand, within ABZR86_RS04230at 952.412 kb on - strand, within ABZR86_RS04230at 952.412 kb on - strand, within ABZR86_RS04230at 952.429 kb on - strand, within ABZR86_RS04230at 952.429 kb on - strand, within ABZR86_RS04230at 952.609 kb on + strandat 952.609 kb on + strandat 952.609 kb on + strandat 952.700 kb on + strand, within ABZR86_RS04235at 952.700 kb on + strand, within ABZR86_RS04235at 952.700 kb on + strand, within ABZR86_RS04235at 952.701 kb on - strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.707 kb on + strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.708 kb on - strand, within ABZR86_RS04235at 952.710 kb on - strand, within ABZR86_RS04235at 952.710 kb on - strand, within ABZR86_RS04235at 952.710 kb on - strand, within ABZR86_RS04235at 952.710 kb on - strand, within ABZR86_RS04235at 952.710 kb on - strand, within ABZR86_RS04235at 952.710 kb on - strand, within ABZR86_RS04235at 952.716 kb on - strand, within ABZR86_RS04235at 952.716 kb on - strand, within ABZR86_RS04235at 952.929 kb on - strand, within ABZR86_RS04235at 952.974 kb on + strand, within ABZR86_RS04235at 952.986 kb on + strand, within ABZR86_RS04235at 952.986 kb on + strand, within ABZR86_RS04235at 952.986 kb on + strand, within ABZR86_RS04235at 952.986 kb on + strand, within ABZR86_RS04235at 952.987 kb on - strand, within ABZR86_RS04235at 952.987 kb on - strand, within ABZR86_RS04235at 953.118 kb on + strand, within ABZR86_RS04235at 953.118 kb on + strand, within ABZR86_RS04235at 953.118 kb on + strand, within ABZR86_RS04235at 953.119 kb on - strand, within ABZR86_RS04235at 953.320 kb on + strand, within ABZR86_RS04235at 953.321 kb on - strand, within ABZR86_RS04235at 953.338 kb on + strand, within ABZR86_RS04235at 953.339 kb on - strand, within ABZR86_RS04235at 953.462 kb on + strandat 953.463 kb on - strandat 953.463 kb on - strandat 953.473 kb on + strandat 953.474 kb on + strandat 953.474 kb on + strandat 953.475 kb on - strandat 953.582 kb on + strandat 953.582 kb on + strandat 953.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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950,101 + +0.3
950,227 + +1.0
950,227 + -0.8
950,227 + -0.3
950,228 - +0.3
950,349 + +0.7
950,395 + ABZR86_RS04225 0.21 -0.3
950,395 + ABZR86_RS04225 0.21 +0.6
950,395 + ABZR86_RS04225 0.21 -0.7
950,396 - ABZR86_RS04225 0.22 -0.4
950,407 + ABZR86_RS04225 0.27 -2.0
950,407 + ABZR86_RS04225 0.27 +0.7
950,408 - ABZR86_RS04225 0.27 -0.2
950,418 + ABZR86_RS04225 0.32 -0.8
950,418 + ABZR86_RS04225 0.32 -0.3
950,418 + ABZR86_RS04225 0.32 +0.1
950,418 + ABZR86_RS04225 0.32 -0.5
950,418 + ABZR86_RS04225 0.32 +0.0
950,418 + ABZR86_RS04225 0.32 -1.0
950,418 + ABZR86_RS04225 0.32 +0.3
950,418 + ABZR86_RS04225 0.32 +0.5
950,419 - ABZR86_RS04225 0.32 -0.3
950,419 - ABZR86_RS04225 0.32 -0.7
950,419 - ABZR86_RS04225 0.32 -0.5
950,419 - ABZR86_RS04225 0.32 -0.1
950,419 - ABZR86_RS04225 0.32 +1.2
950,419 - ABZR86_RS04225 0.32 +1.6
950,419 - ABZR86_RS04225 0.32 +1.3
950,617 + +0.2
950,617 + -0.8
950,719 - +0.7
950,740 + +0.2
950,741 - -2.9
950,743 + -0.4
950,743 + -1.4
950,743 + +0.8
950,743 + +0.7
950,743 + +0.8
950,744 - -0.4
950,744 - +0.9
950,744 - -0.3
950,765 + -0.1
950,765 + -0.2
950,766 - -0.3
950,826 + -0.5
950,826 + -1.0
950,826 + -0.4
950,826 + -1.9
950,827 - -2.9
950,878 + -0.4
950,911 - +0.2
950,911 - -0.1
950,962 + +0.7
950,963 - +0.4
951,090 + +0.9
951,090 + +0.5
951,090 + -0.5
951,090 + -2.4
951,093 + -1.2
951,093 + -0.4
951,093 + +0.4
951,093 + +0.5
951,094 - +0.2
951,094 - -0.6
951,147 + +1.5
951,184 + +0.0
951,185 - +0.9
951,409 + ABZR86_RS04230 0.22 -3.5
951,475 + ABZR86_RS04230 0.26 -0.3
951,475 + ABZR86_RS04230 0.26 +0.6
951,476 - ABZR86_RS04230 0.26 -2.2
951,498 + ABZR86_RS04230 0.28 -0.6
951,499 - ABZR86_RS04230 0.28 -1.0
951,499 - ABZR86_RS04230 0.28 +1.7
951,499 - ABZR86_RS04230 0.28 +0.1
951,504 + ABZR86_RS04230 0.28 +0.8
951,505 - ABZR86_RS04230 0.28 -0.1
951,515 + ABZR86_RS04230 0.29 +0.7
951,516 - ABZR86_RS04230 0.29 +1.5
951,516 - ABZR86_RS04230 0.29 -0.5
951,516 - ABZR86_RS04230 0.29 -1.0
951,516 - ABZR86_RS04230 0.29 +1.6
951,760 + ABZR86_RS04230 0.45 -3.9
951,761 - ABZR86_RS04230 0.45 -0.9
951,761 - ABZR86_RS04230 0.45 +2.1
951,822 - ABZR86_RS04230 0.49 +1.5
951,891 + ABZR86_RS04230 0.54 -0.3
951,993 - ABZR86_RS04230 0.61 +0.0
951,993 - ABZR86_RS04230 0.61 +0.8
951,993 - ABZR86_RS04230 0.61 +0.7
951,996 - ABZR86_RS04230 0.61 -1.1
951,996 - ABZR86_RS04230 0.61 +0.8
951,996 - ABZR86_RS04230 0.61 -0.2
952,000 - ABZR86_RS04230 0.61 -2.6
952,000 - ABZR86_RS04230 0.61 +0.1
952,000 - ABZR86_RS04230 0.61 +0.1
952,012 + ABZR86_RS04230 0.62 -0.0
952,097 + ABZR86_RS04230 0.68 -0.4
952,097 + ABZR86_RS04230 0.68 +1.5
952,411 + ABZR86_RS04230 0.88 +2.2
952,411 + ABZR86_RS04230 0.88 +0.6
952,411 + ABZR86_RS04230 0.88 +0.0
952,411 + ABZR86_RS04230 0.88 +1.1
952,412 - ABZR86_RS04230 0.89 +0.7
952,412 - ABZR86_RS04230 0.89 -1.6
952,429 - ABZR86_RS04230 0.90 +0.4
952,429 - ABZR86_RS04230 0.90 +1.2
952,609 + -0.3
952,609 + +3.4
952,609 + +0.1
952,700 + ABZR86_RS04235 0.11 +1.0
952,700 + ABZR86_RS04235 0.11 +1.0
952,700 + ABZR86_RS04235 0.11 -0.0
952,701 - ABZR86_RS04235 0.12 +1.2
952,707 + ABZR86_RS04235 0.12 -0.3
952,707 + ABZR86_RS04235 0.12 +0.9
952,707 + ABZR86_RS04235 0.12 -0.8
952,707 + ABZR86_RS04235 0.12 +0.7
952,707 + ABZR86_RS04235 0.12 +0.7
952,707 + ABZR86_RS04235 0.12 +0.3
952,707 + ABZR86_RS04235 0.12 -0.3
952,707 + ABZR86_RS04235 0.12 +0.4
952,707 + ABZR86_RS04235 0.12 -0.1
952,707 + ABZR86_RS04235 0.12 +0.2
952,707 + ABZR86_RS04235 0.12 -0.3
952,707 + ABZR86_RS04235 0.12 -0.2
952,707 + ABZR86_RS04235 0.12 -0.3
952,708 - ABZR86_RS04235 0.12 +0.6
952,708 - ABZR86_RS04235 0.12 +0.6
952,708 - ABZR86_RS04235 0.12 +0.9
952,708 - ABZR86_RS04235 0.12 +0.2
952,708 - ABZR86_RS04235 0.12 +1.0
952,708 - ABZR86_RS04235 0.12 +0.5
952,708 - ABZR86_RS04235 0.12 -1.6
952,708 - ABZR86_RS04235 0.12 -1.5
952,708 - ABZR86_RS04235 0.12 -0.6
952,708 - ABZR86_RS04235 0.12 +0.4
952,708 - ABZR86_RS04235 0.12 +0.3
952,708 - ABZR86_RS04235 0.12 +0.4
952,708 - ABZR86_RS04235 0.12 +2.5
952,708 - ABZR86_RS04235 0.12 -0.4
952,708 - ABZR86_RS04235 0.12 +0.2
952,708 - ABZR86_RS04235 0.12 +0.0
952,710 - ABZR86_RS04235 0.13 +0.3
952,710 - ABZR86_RS04235 0.13 -0.1
952,710 - ABZR86_RS04235 0.13 +1.0
952,710 - ABZR86_RS04235 0.13 -0.9
952,710 - ABZR86_RS04235 0.13 +0.5
952,710 - ABZR86_RS04235 0.13 +0.9
952,716 - ABZR86_RS04235 0.13 +1.1
952,716 - ABZR86_RS04235 0.13 +1.0
952,929 - ABZR86_RS04235 0.37 -2.6
952,974 + ABZR86_RS04235 0.42 +1.6
952,986 + ABZR86_RS04235 0.43 -0.7
952,986 + ABZR86_RS04235 0.43 +0.2
952,986 + ABZR86_RS04235 0.43 +0.5
952,986 + ABZR86_RS04235 0.43 +0.0
952,987 - ABZR86_RS04235 0.44 +1.2
952,987 - ABZR86_RS04235 0.44 -0.5
953,118 + ABZR86_RS04235 0.58 -0.4
953,118 + ABZR86_RS04235 0.58 -0.5
953,118 + ABZR86_RS04235 0.58 +1.4
953,119 - ABZR86_RS04235 0.58 +0.6
953,320 + ABZR86_RS04235 0.81 +0.8
953,321 - ABZR86_RS04235 0.81 +0.1
953,338 + ABZR86_RS04235 0.83 -2.8
953,339 - ABZR86_RS04235 0.83 +0.1
953,462 + +1.1
953,463 - +0.5
953,463 - -0.8
953,473 + +0.9
953,474 + +0.3
953,474 + -0.2
953,475 - -0.5
953,582 + -1.1
953,582 + -0.6
953,583 - +1.9

Or see this region's nucleotide sequence