Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03950

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03945 and ABZR86_RS03950 are separated by 89 nucleotidesABZR86_RS03950 and ABZR86_RS03955 are separated by 202 nucleotides ABZR86_RS03945: ABZR86_RS03945 - GlxA family transcriptional regulator, at 864,231 to 865,166 _RS03945 ABZR86_RS03950: ABZR86_RS03950 - RidA family protein, at 865,256 to 865,717 _RS03950 ABZR86_RS03955: ABZR86_RS03955 - DEAD/DEAH box helicase, at 865,920 to 868,328 _RS03955 Position (kb) 865 866Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 864.336 kb on - strand, within ABZR86_RS03945at 864.580 kb on + strand, within ABZR86_RS03945at 864.770 kb on - strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.060 kb on + strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.061 kb on - strand, within ABZR86_RS03945at 865.359 kb on + strand, within ABZR86_RS03950at 865.359 kb on + strand, within ABZR86_RS03950at 865.359 kb on + strand, within ABZR86_RS03950at 865.359 kb on + strand, within ABZR86_RS03950at 865.360 kb on - strand, within ABZR86_RS03950at 865.360 kb on - strand, within ABZR86_RS03950at 865.360 kb on - strand, within ABZR86_RS03950at 865.369 kb on - strand, within ABZR86_RS03950at 865.557 kb on + strand, within ABZR86_RS03950at 865.558 kb on - strand, within ABZR86_RS03950at 865.558 kb on - strand, within ABZR86_RS03950at 865.558 kb on - strand, within ABZR86_RS03950at 865.706 kb on - strandat 865.706 kb on - strandat 865.746 kb on - strandat 865.842 kb on + strandat 866.016 kb on + strandat 866.016 kb on + strandat 866.067 kb on + strandat 866.067 kb on + strandat 866.067 kb on + strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.068 kb on - strandat 866.071 kb on + strandat 866.071 kb on + strandat 866.071 kb on + strandat 866.072 kb on - strandat 866.139 kb on + strandat 866.139 kb on + strandat 866.139 kb on + strandat 866.280 kb on + strand, within ABZR86_RS03955at 866.280 kb on + strand, within ABZR86_RS03955at 866.280 kb on + strand, within ABZR86_RS03955at 866.280 kb on + strand, within ABZR86_RS03955at 866.280 kb on + strand, within ABZR86_RS03955at 866.281 kb on - strand, within ABZR86_RS03955at 866.511 kb on + strand, within ABZR86_RS03955at 866.511 kb on + strand, within ABZR86_RS03955at 866.511 kb on + strand, within ABZR86_RS03955at 866.512 kb on - strand, within ABZR86_RS03955at 866.512 kb on - strand, within ABZR86_RS03955at 866.512 kb on - strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.534 kb on + strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.535 kb on - strand, within ABZR86_RS03955at 866.538 kb on + strand, within ABZR86_RS03955at 866.539 kb on - strand, within ABZR86_RS03955at 866.605 kb on - strand, within ABZR86_RS03955

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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864,336 - ABZR86_RS03945 0.11 +0.2
864,580 + ABZR86_RS03945 0.37 -0.1
864,770 - ABZR86_RS03945 0.58 -0.3
865,060 + ABZR86_RS03945 0.89 +0.6
865,060 + ABZR86_RS03945 0.89 +1.5
865,060 + ABZR86_RS03945 0.89 +0.8
865,060 + ABZR86_RS03945 0.89 -2.0
865,060 + ABZR86_RS03945 0.89 +1.0
865,060 + ABZR86_RS03945 0.89 +1.0
865,060 + ABZR86_RS03945 0.89 -0.6
865,060 + ABZR86_RS03945 0.89 -0.2
865,060 + ABZR86_RS03945 0.89 +0.2
865,060 + ABZR86_RS03945 0.89 +0.5
865,060 + ABZR86_RS03945 0.89 -0.7
865,061 - ABZR86_RS03945 0.89 +0.3
865,061 - ABZR86_RS03945 0.89 -1.4
865,061 - ABZR86_RS03945 0.89 -0.6
865,061 - ABZR86_RS03945 0.89 +1.0
865,359 + ABZR86_RS03950 0.22 +1.2
865,359 + ABZR86_RS03950 0.22 +0.2
865,359 + ABZR86_RS03950 0.22 -0.7
865,359 + ABZR86_RS03950 0.22 -0.5
865,360 - ABZR86_RS03950 0.23 -1.1
865,360 - ABZR86_RS03950 0.23 +0.6
865,360 - ABZR86_RS03950 0.23 -0.6
865,369 - ABZR86_RS03950 0.24 -1.5
865,557 + ABZR86_RS03950 0.65 -2.5
865,558 - ABZR86_RS03950 0.65 +0.0
865,558 - ABZR86_RS03950 0.65 +1.2
865,558 - ABZR86_RS03950 0.65 -0.3
865,706 - +0.7
865,706 - -1.0
865,746 - +0.0
865,842 + +0.8
866,016 + +0.2
866,016 + -0.1
866,067 + +0.6
866,067 + -1.3
866,067 + +0.3
866,068 - +0.4
866,068 - -0.3
866,068 - +0.2
866,068 - +1.0
866,068 - +0.4
866,071 + +0.1
866,071 + -0.8
866,071 + +0.1
866,072 - -0.0
866,139 + +0.0
866,139 + +0.8
866,139 + -0.8
866,280 + ABZR86_RS03955 0.15 -0.0
866,280 + ABZR86_RS03955 0.15 +1.0
866,280 + ABZR86_RS03955 0.15 +1.0
866,280 + ABZR86_RS03955 0.15 -0.1
866,280 + ABZR86_RS03955 0.15 -3.9
866,281 - ABZR86_RS03955 0.15 +1.2
866,511 + ABZR86_RS03955 0.25 -0.8
866,511 + ABZR86_RS03955 0.25 +0.5
866,511 + ABZR86_RS03955 0.25 -3.3
866,512 - ABZR86_RS03955 0.25 -0.1
866,512 - ABZR86_RS03955 0.25 -0.5
866,512 - ABZR86_RS03955 0.25 +0.6
866,534 + ABZR86_RS03955 0.25 +1.6
866,534 + ABZR86_RS03955 0.25 -1.7
866,534 + ABZR86_RS03955 0.25 -2.9
866,534 + ABZR86_RS03955 0.25 -0.4
866,534 + ABZR86_RS03955 0.25 -1.5
866,534 + ABZR86_RS03955 0.25 +3.0
866,534 + ABZR86_RS03955 0.25 -1.5
866,534 + ABZR86_RS03955 0.25 -1.6
866,534 + ABZR86_RS03955 0.25 +0.5
866,534 + ABZR86_RS03955 0.25 +0.3
866,535 - ABZR86_RS03955 0.26 -0.0
866,535 - ABZR86_RS03955 0.26 +1.2
866,535 - ABZR86_RS03955 0.26 +0.7
866,535 - ABZR86_RS03955 0.26 -2.2
866,535 - ABZR86_RS03955 0.26 -0.6
866,535 - ABZR86_RS03955 0.26 +0.6
866,535 - ABZR86_RS03955 0.26 -0.7
866,535 - ABZR86_RS03955 0.26 -0.3
866,535 - ABZR86_RS03955 0.26 -0.9
866,535 - ABZR86_RS03955 0.26 -0.1
866,538 + ABZR86_RS03955 0.26 +0.1
866,539 - ABZR86_RS03955 0.26 +1.6
866,605 - ABZR86_RS03955 0.28 -0.2

Or see this region's nucleotide sequence