Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01925

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01920 and ABZR86_RS01925 are separated by 126 nucleotidesABZR86_RS01925 and ABZR86_RS01930 are separated by 79 nucleotidesABZR86_RS01930 and ABZR86_RS01935 are separated by 1 nucleotides ABZR86_RS01920: ABZR86_RS01920 - phosphoglucosamine mutase, at 417,171 to 418,523 _RS01920 ABZR86_RS01925: ABZR86_RS01925 - 2-oxoglutarate and iron-dependent oxygenase domain-containing protein, at 418,650 to 419,597 _RS01925 ABZR86_RS01930: ABZR86_RS01930 - hypothetical protein, at 419,677 to 420,162 _RS01930 ABZR86_RS01935: ABZR86_RS01935 - SDR family oxidoreductase, at 420,164 to 420,976 _RS01935 Position (kb) 418 419 420Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 418.630 kb on + strandat 418.630 kb on + strandat 418.630 kb on + strandat 418.630 kb on + strandat 418.630 kb on + strandat 418.630 kb on + strandat 418.631 kb on - strandat 418.631 kb on - strandat 418.631 kb on - strandat 418.631 kb on - strandat 418.655 kb on + strandat 418.655 kb on + strandat 418.655 kb on + strandat 418.655 kb on + strandat 418.656 kb on - strandat 418.656 kb on - strandat 418.656 kb on - strandat 418.695 kb on + strandat 418.695 kb on + strandat 418.721 kb on - strandat 418.750 kb on - strand, within ABZR86_RS01925at 418.750 kb on - strand, within ABZR86_RS01925at 418.806 kb on + strand, within ABZR86_RS01925at 418.806 kb on + strand, within ABZR86_RS01925at 418.807 kb on - strand, within ABZR86_RS01925at 418.857 kb on + strand, within ABZR86_RS01925at 418.857 kb on + strand, within ABZR86_RS01925at 418.858 kb on - strand, within ABZR86_RS01925at 418.858 kb on - strand, within ABZR86_RS01925at 418.890 kb on + strand, within ABZR86_RS01925at 418.890 kb on + strand, within ABZR86_RS01925at 418.890 kb on + strand, within ABZR86_RS01925at 418.929 kb on + strand, within ABZR86_RS01925at 418.930 kb on - strand, within ABZR86_RS01925at 418.930 kb on - strand, within ABZR86_RS01925at 418.930 kb on - strand, within ABZR86_RS01925at 419.111 kb on + strand, within ABZR86_RS01925at 419.130 kb on + strand, within ABZR86_RS01925at 419.130 kb on + strand, within ABZR86_RS01925at 419.131 kb on - strand, within ABZR86_RS01925at 419.131 kb on - strand, within ABZR86_RS01925at 419.131 kb on - strand, within ABZR86_RS01925at 419.131 kb on - strand, within ABZR86_RS01925at 419.386 kb on - strand, within ABZR86_RS01925at 419.445 kb on + strand, within ABZR86_RS01925at 419.457 kb on + strand, within ABZR86_RS01925at 419.457 kb on + strand, within ABZR86_RS01925at 419.458 kb on - strand, within ABZR86_RS01925at 419.559 kb on + strandat 419.559 kb on + strandat 419.841 kb on + strand, within ABZR86_RS01930at 419.900 kb on - strand, within ABZR86_RS01930at 419.900 kb on - strand, within ABZR86_RS01930at 419.923 kb on + strand, within ABZR86_RS01930at 419.924 kb on - strand, within ABZR86_RS01930at 419.924 kb on - strand, within ABZR86_RS01930at 420.041 kb on + strand, within ABZR86_RS01930at 420.042 kb on - strand, within ABZR86_RS01930at 420.064 kb on + strand, within ABZR86_RS01930at 420.065 kb on - strand, within ABZR86_RS01930at 420.065 kb on - strand, within ABZR86_RS01930at 420.139 kb on - strandat 420.144 kb on + strandat 420.144 kb on + strandat 420.144 kb on + strandat 420.145 kb on - strandat 420.145 kb on - strandat 420.145 kb on - strandat 420.145 kb on - strandat 420.412 kb on + strand, within ABZR86_RS01935at 420.413 kb on - strand, within ABZR86_RS01935at 420.492 kb on + strand, within ABZR86_RS01935at 420.492 kb on + strand, within ABZR86_RS01935at 420.492 kb on + strand, within ABZR86_RS01935at 420.492 kb on + strand, within ABZR86_RS01935at 420.492 kb on + strand, within ABZR86_RS01935at 420.493 kb on - strand, within ABZR86_RS01935at 420.493 kb on - strand, within ABZR86_RS01935at 420.493 kb on - strand, within ABZR86_RS01935at 420.493 kb on - strand, within ABZR86_RS01935at 420.493 kb on - strand, within ABZR86_RS01935at 420.511 kb on - strand, within ABZR86_RS01935at 420.511 kb on - strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.517 kb on + strand, within ABZR86_RS01935at 420.518 kb on - strand, within ABZR86_RS01935at 420.518 kb on - strand, within ABZR86_RS01935at 420.518 kb on - strand, within ABZR86_RS01935at 420.518 kb on - strand, within ABZR86_RS01935at 420.518 kb on - strand, within ABZR86_RS01935at 420.518 kb on - strand, within ABZR86_RS01935at 420.518 kb on - strand, within ABZR86_RS01935at 420.518 kb on - strand, within ABZR86_RS01935at 420.518 kb on - strand, within ABZR86_RS01935at 420.518 kb on - strand, within ABZR86_RS01935

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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418,630 + +1.5
418,630 + +0.7
418,630 + -2.9
418,630 + +0.4
418,630 + -0.1
418,630 + -0.5
418,631 - -0.1
418,631 - +0.8
418,631 - +0.5
418,631 - -1.3
418,655 + -0.1
418,655 + +1.4
418,655 + +0.8
418,655 + +1.5
418,656 - +0.0
418,656 - +1.0
418,656 - +0.4
418,695 + -2.6
418,695 + -0.1
418,721 - +1.2
418,750 - ABZR86_RS01925 0.11 +0.5
418,750 - ABZR86_RS01925 0.11 +0.7
418,806 + ABZR86_RS01925 0.16 +0.2
418,806 + ABZR86_RS01925 0.16 -1.4
418,807 - ABZR86_RS01925 0.17 +0.7
418,857 + ABZR86_RS01925 0.22 +0.4
418,857 + ABZR86_RS01925 0.22 +0.8
418,858 - ABZR86_RS01925 0.22 -1.1
418,858 - ABZR86_RS01925 0.22 -1.7
418,890 + ABZR86_RS01925 0.25 -0.7
418,890 + ABZR86_RS01925 0.25 -3.3
418,890 + ABZR86_RS01925 0.25 +0.0
418,929 + ABZR86_RS01925 0.29 -2.3
418,930 - ABZR86_RS01925 0.30 -0.2
418,930 - ABZR86_RS01925 0.30 +0.8
418,930 - ABZR86_RS01925 0.30 +0.5
419,111 + ABZR86_RS01925 0.49 -1.0
419,130 + ABZR86_RS01925 0.51 +1.6
419,130 + ABZR86_RS01925 0.51 -0.6
419,131 - ABZR86_RS01925 0.51 +1.3
419,131 - ABZR86_RS01925 0.51 -1.6
419,131 - ABZR86_RS01925 0.51 -4.2
419,131 - ABZR86_RS01925 0.51 -3.0
419,386 - ABZR86_RS01925 0.78 -1.0
419,445 + ABZR86_RS01925 0.84 -0.2
419,457 + ABZR86_RS01925 0.85 -0.5
419,457 + ABZR86_RS01925 0.85 +1.4
419,458 - ABZR86_RS01925 0.85 -0.8
419,559 + -0.5
419,559 + +1.0
419,841 + ABZR86_RS01930 0.34 -1.9
419,900 - ABZR86_RS01930 0.46 +0.7
419,900 - ABZR86_RS01930 0.46 -0.1
419,923 + ABZR86_RS01930 0.51 -0.6
419,924 - ABZR86_RS01930 0.51 +0.3
419,924 - ABZR86_RS01930 0.51 +1.1
420,041 + ABZR86_RS01930 0.75 +1.8
420,042 - ABZR86_RS01930 0.75 -0.6
420,064 + ABZR86_RS01930 0.80 +0.6
420,065 - ABZR86_RS01930 0.80 -1.4
420,065 - ABZR86_RS01930 0.80 -2.0
420,139 - +0.1
420,144 + -2.3
420,144 + +0.1
420,144 + -0.9
420,145 - +1.6
420,145 - +1.1
420,145 - +0.0
420,145 - +0.8
420,412 + ABZR86_RS01935 0.31 +0.4
420,413 - ABZR86_RS01935 0.31 +0.3
420,492 + ABZR86_RS01935 0.40 -1.5
420,492 + ABZR86_RS01935 0.40 +1.1
420,492 + ABZR86_RS01935 0.40 -1.2
420,492 + ABZR86_RS01935 0.40 +0.8
420,492 + ABZR86_RS01935 0.40 -2.0
420,493 - ABZR86_RS01935 0.40 -1.7
420,493 - ABZR86_RS01935 0.40 -2.0
420,493 - ABZR86_RS01935 0.40 -0.6
420,493 - ABZR86_RS01935 0.40 -0.4
420,493 - ABZR86_RS01935 0.40 +0.1
420,511 - ABZR86_RS01935 0.43 -2.5
420,511 - ABZR86_RS01935 0.43 -0.4
420,517 + ABZR86_RS01935 0.43 -1.6
420,517 + ABZR86_RS01935 0.43 +0.1
420,517 + ABZR86_RS01935 0.43 +0.5
420,517 + ABZR86_RS01935 0.43 -1.0
420,517 + ABZR86_RS01935 0.43 -0.2
420,517 + ABZR86_RS01935 0.43 -0.3
420,517 + ABZR86_RS01935 0.43 -0.1
420,517 + ABZR86_RS01935 0.43 -1.2
420,517 + ABZR86_RS01935 0.43 -0.4
420,517 + ABZR86_RS01935 0.43 +0.4
420,517 + ABZR86_RS01935 0.43 -0.3
420,518 - ABZR86_RS01935 0.44 +0.5
420,518 - ABZR86_RS01935 0.44 +0.3
420,518 - ABZR86_RS01935 0.44 -0.5
420,518 - ABZR86_RS01935 0.44 -0.7
420,518 - ABZR86_RS01935 0.44 -0.4
420,518 - ABZR86_RS01935 0.44 -0.0
420,518 - ABZR86_RS01935 0.44 -0.0
420,518 - ABZR86_RS01935 0.44 -1.5
420,518 - ABZR86_RS01935 0.44 -0.5
420,518 - ABZR86_RS01935 0.44 +0.2

Or see this region's nucleotide sequence