Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01420

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01415 and ABZR86_RS01420 overlap by 8 nucleotidesABZR86_RS01420 and ABZR86_RS01425 are separated by 26 nucleotidesABZR86_RS01425 and ABZR86_RS01430 are separated by 103 nucleotides ABZR86_RS01415: ABZR86_RS01415 - histidine kinase, at 303,585 to 304,829 _RS01415 ABZR86_RS01420: ABZR86_RS01420 - LytTR family DNA-binding domain-containing protein, at 304,822 to 305,589 _RS01420 ABZR86_RS01425: ABZR86_RS01425 - hypothetical protein, at 305,616 to 305,963 _RS01425 ABZR86_RS01430: ABZR86_RS01430 - S41 family peptidase, at 306,067 to 307,893 _RS01430 Position (kb) 304 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 304.311 kb on + strand, within ABZR86_RS01415at 304.311 kb on + strand, within ABZR86_RS01415at 304.311 kb on + strand, within ABZR86_RS01415at 304.311 kb on + strand, within ABZR86_RS01415at 304.312 kb on - strand, within ABZR86_RS01415at 304.312 kb on - strand, within ABZR86_RS01415at 304.312 kb on - strand, within ABZR86_RS01415at 304.369 kb on - strand, within ABZR86_RS01415at 304.369 kb on - strand, within ABZR86_RS01415at 304.369 kb on - strand, within ABZR86_RS01415at 304.444 kb on - strand, within ABZR86_RS01415at 304.444 kb on - strand, within ABZR86_RS01415at 304.734 kb on + strandat 304.827 kb on + strandat 304.827 kb on + strandat 304.827 kb on + strandat 304.827 kb on + strandat 304.827 kb on + strandat 304.827 kb on + strandat 304.828 kb on - strandat 304.828 kb on - strandat 304.828 kb on - strandat 304.828 kb on - strandat 304.828 kb on - strandat 305.083 kb on + strand, within ABZR86_RS01420at 305.084 kb on - strand, within ABZR86_RS01420at 305.119 kb on + strand, within ABZR86_RS01420at 305.120 kb on - strand, within ABZR86_RS01420at 305.120 kb on - strand, within ABZR86_RS01420at 305.332 kb on + strand, within ABZR86_RS01420at 305.332 kb on + strand, within ABZR86_RS01420at 305.333 kb on - strand, within ABZR86_RS01420at 305.333 kb on - strand, within ABZR86_RS01420at 305.353 kb on + strand, within ABZR86_RS01420at 305.353 kb on + strand, within ABZR86_RS01420at 305.353 kb on + strand, within ABZR86_RS01420at 305.353 kb on + strand, within ABZR86_RS01420at 305.353 kb on + strand, within ABZR86_RS01420at 305.354 kb on - strand, within ABZR86_RS01420at 305.354 kb on - strand, within ABZR86_RS01420at 305.354 kb on - strand, within ABZR86_RS01420at 305.627 kb on - strandat 305.627 kb on - strandat 305.627 kb on - strandat 305.627 kb on - strandat 305.641 kb on - strandat 305.966 kb on + strandat 305.966 kb on + strandat 305.966 kb on + strandat 305.966 kb on + strandat 305.967 kb on - strandat 305.967 kb on - strandat 305.967 kb on - strandat 306.019 kb on + strandat 306.019 kb on + strandat 306.020 kb on - strandat 306.052 kb on + strandat 306.052 kb on + strandat 306.052 kb on + strandat 306.052 kb on + strandat 306.233 kb on + strandat 306.233 kb on + strandat 306.234 kb on - strandat 306.323 kb on + strand, within ABZR86_RS01430at 306.323 kb on + strand, within ABZR86_RS01430at 306.323 kb on + strand, within ABZR86_RS01430at 306.323 kb on + strand, within ABZR86_RS01430at 306.323 kb on + strand, within ABZR86_RS01430at 306.323 kb on + strand, within ABZR86_RS01430at 306.323 kb on + strand, within ABZR86_RS01430at 306.324 kb on - strand, within ABZR86_RS01430at 306.324 kb on - strand, within ABZR86_RS01430at 306.324 kb on - strand, within ABZR86_RS01430at 306.324 kb on - strand, within ABZR86_RS01430at 306.528 kb on + strand, within ABZR86_RS01430at 306.529 kb on - strand, within ABZR86_RS01430at 306.581 kb on + strand, within ABZR86_RS01430at 306.581 kb on + strand, within ABZR86_RS01430at 306.582 kb on - strand, within ABZR86_RS01430

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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304,311 + ABZR86_RS01415 0.58 -2.3
304,311 + ABZR86_RS01415 0.58 -0.5
304,311 + ABZR86_RS01415 0.58 -0.7
304,311 + ABZR86_RS01415 0.58 +0.4
304,312 - ABZR86_RS01415 0.58 +0.6
304,312 - ABZR86_RS01415 0.58 -0.2
304,312 - ABZR86_RS01415 0.58 +0.2
304,369 - ABZR86_RS01415 0.63 -0.8
304,369 - ABZR86_RS01415 0.63 +1.9
304,369 - ABZR86_RS01415 0.63 -0.8
304,444 - ABZR86_RS01415 0.69 +0.8
304,444 - ABZR86_RS01415 0.69 +0.0
304,734 + +0.2
304,827 + -0.0
304,827 + +0.3
304,827 + -2.2
304,827 + -0.2
304,827 + +0.8
304,827 + +1.2
304,828 - +0.9
304,828 - +0.4
304,828 - -0.8
304,828 - +0.4
304,828 - -1.2
305,083 + ABZR86_RS01420 0.34 +0.9
305,084 - ABZR86_RS01420 0.34 -0.6
305,119 + ABZR86_RS01420 0.39 -0.8
305,120 - ABZR86_RS01420 0.39 +0.9
305,120 - ABZR86_RS01420 0.39 -2.4
305,332 + ABZR86_RS01420 0.66 +0.8
305,332 + ABZR86_RS01420 0.66 +1.3
305,333 - ABZR86_RS01420 0.67 +0.6
305,333 - ABZR86_RS01420 0.67 +0.7
305,353 + ABZR86_RS01420 0.69 -0.6
305,353 + ABZR86_RS01420 0.69 -1.5
305,353 + ABZR86_RS01420 0.69 +0.9
305,353 + ABZR86_RS01420 0.69 +2.1
305,353 + ABZR86_RS01420 0.69 -0.5
305,354 - ABZR86_RS01420 0.69 -0.1
305,354 - ABZR86_RS01420 0.69 +1.6
305,354 - ABZR86_RS01420 0.69 -3.4
305,627 - +0.6
305,627 - +0.4
305,627 - +0.5
305,627 - -1.0
305,641 - +0.2
305,966 + +0.7
305,966 + -0.0
305,966 + -0.5
305,966 + -3.2
305,967 - +0.3
305,967 - +0.2
305,967 - -1.4
306,019 + -0.4
306,019 + -0.4
306,020 - -1.7
306,052 + -0.3
306,052 + +1.1
306,052 + -0.1
306,052 + +2.1
306,233 + -0.5
306,233 + -1.6
306,234 - +1.0
306,323 + ABZR86_RS01430 0.14 +1.2
306,323 + ABZR86_RS01430 0.14 -1.1
306,323 + ABZR86_RS01430 0.14 +1.6
306,323 + ABZR86_RS01430 0.14 -0.5
306,323 + ABZR86_RS01430 0.14 +0.3
306,323 + ABZR86_RS01430 0.14 +0.5
306,323 + ABZR86_RS01430 0.14 -1.5
306,324 - ABZR86_RS01430 0.14 -0.2
306,324 - ABZR86_RS01430 0.14 +0.5
306,324 - ABZR86_RS01430 0.14 -2.0
306,324 - ABZR86_RS01430 0.14 -0.3
306,528 + ABZR86_RS01430 0.25 -2.0
306,529 - ABZR86_RS01430 0.25 -3.0
306,581 + ABZR86_RS01430 0.28 -3.0
306,581 + ABZR86_RS01430 0.28 -0.8
306,582 - ABZR86_RS01430 0.28 +2.5

Or see this region's nucleotide sequence