Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00750

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00740 and ABZR86_RS00745 are separated by 112 nucleotidesABZR86_RS00745 and ABZR86_RS00750 are separated by 40 nucleotidesABZR86_RS00750 and ABZR86_RS00755 are separated by 61 nucleotides ABZR86_RS00740: ABZR86_RS00740 - isocitrate dehydrogenase, at 146,145 to 147,161 _RS00740 ABZR86_RS00745: ABZR86_RS00745 - carboxymuconolactone decarboxylase family protein, at 147,274 to 147,732 _RS00745 ABZR86_RS00750: ABZR86_RS00750 - RNA polymerase sigma factor SigJ, at 147,773 to 148,672 _RS00750 ABZR86_RS00755: ABZR86_RS00755 - aspartyl/asparaginyl beta-hydroxylase domain-containing protein, at 148,734 to 149,678 _RS00755 Position (kb) 147 148 149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 147.296 kb on + strandat 147.312 kb on + strandat 147.313 kb on - strandat 147.413 kb on + strand, within ABZR86_RS00745at 147.413 kb on + strand, within ABZR86_RS00745at 147.413 kb on + strand, within ABZR86_RS00745at 147.414 kb on - strand, within ABZR86_RS00745at 147.497 kb on + strand, within ABZR86_RS00745at 147.497 kb on + strand, within ABZR86_RS00745at 147.497 kb on + strand, within ABZR86_RS00745at 147.498 kb on - strand, within ABZR86_RS00745at 147.498 kb on - strand, within ABZR86_RS00745at 147.498 kb on - strand, within ABZR86_RS00745at 147.590 kb on + strand, within ABZR86_RS00745at 147.590 kb on + strand, within ABZR86_RS00745at 147.591 kb on - strand, within ABZR86_RS00745at 147.591 kb on - strand, within ABZR86_RS00745at 147.591 kb on - strand, within ABZR86_RS00745at 147.591 kb on - strand, within ABZR86_RS00745at 147.979 kb on + strand, within ABZR86_RS00750at 147.979 kb on + strand, within ABZR86_RS00750at 147.979 kb on + strand, within ABZR86_RS00750at 148.284 kb on + strand, within ABZR86_RS00750at 148.284 kb on + strand, within ABZR86_RS00750at 148.285 kb on - strand, within ABZR86_RS00750at 148.285 kb on - strand, within ABZR86_RS00750at 148.285 kb on - strand, within ABZR86_RS00750at 148.443 kb on + strand, within ABZR86_RS00750at 148.444 kb on - strand, within ABZR86_RS00750at 148.577 kb on + strand, within ABZR86_RS00750at 148.577 kb on + strand, within ABZR86_RS00750at 148.577 kb on + strand, within ABZR86_RS00750at 148.577 kb on + strand, within ABZR86_RS00750at 148.577 kb on + strand, within ABZR86_RS00750at 148.577 kb on + strand, within ABZR86_RS00750at 148.577 kb on + strand, within ABZR86_RS00750at 148.578 kb on - strand, within ABZR86_RS00750at 148.578 kb on - strand, within ABZR86_RS00750at 148.578 kb on - strand, within ABZR86_RS00750at 148.578 kb on - strand, within ABZR86_RS00750at 148.614 kb on + strandat 148.615 kb on - strandat 148.751 kb on - strandat 148.795 kb on + strandat 148.795 kb on + strandat 148.796 kb on - strandat 148.796 kb on - strandat 148.796 kb on - strandat 148.796 kb on - strandat 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.059 kb on + strand, within ABZR86_RS00755at 149.060 kb on - strand, within ABZR86_RS00755at 149.060 kb on - strand, within ABZR86_RS00755at 149.060 kb on - strand, within ABZR86_RS00755at 149.060 kb on - strand, within ABZR86_RS00755at 149.060 kb on - strand, within ABZR86_RS00755at 149.060 kb on - strand, within ABZR86_RS00755at 149.060 kb on - strand, within ABZR86_RS00755at 149.060 kb on - strand, within ABZR86_RS00755at 149.060 kb on - strand, within ABZR86_RS00755at 149.164 kb on + strand, within ABZR86_RS00755at 149.165 kb on - strand, within ABZR86_RS00755at 149.317 kb on + strand, within ABZR86_RS00755at 149.318 kb on - strand, within ABZR86_RS00755at 149.329 kb on + strand, within ABZR86_RS00755at 149.330 kb on - strand, within ABZR86_RS00755at 149.524 kb on + strand, within ABZR86_RS00755at 149.524 kb on + strand, within ABZR86_RS00755at 149.524 kb on + strand, within ABZR86_RS00755at 149.524 kb on + strand, within ABZR86_RS00755at 149.524 kb on + strand, within ABZR86_RS00755at 149.525 kb on - strand, within ABZR86_RS00755at 149.525 kb on - strand, within ABZR86_RS00755at 149.525 kb on - strand, within ABZR86_RS00755at 149.525 kb on - strand, within ABZR86_RS00755at 149.525 kb on - strand, within ABZR86_RS00755at 149.525 kb on - strand, within ABZR86_RS00755at 149.525 kb on - strand, within ABZR86_RS00755at 149.525 kb on - strand, within ABZR86_RS00755at 149.525 kb on - strand, within ABZR86_RS00755at 149.539 kb on + strand, within ABZR86_RS00755at 149.539 kb on + strand, within ABZR86_RS00755at 149.539 kb on + strand, within ABZR86_RS00755at 149.540 kb on - strand, within ABZR86_RS00755at 149.540 kb on - strand, within ABZR86_RS00755at 149.540 kb on - strand, within ABZR86_RS00755at 149.625 kb on + strandat 149.625 kb on + strandat 149.626 kb on - strandat 149.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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147,296 + -1.1
147,312 + -2.3
147,313 - +0.7
147,413 + ABZR86_RS00745 0.30 +0.8
147,413 + ABZR86_RS00745 0.30 +0.7
147,413 + ABZR86_RS00745 0.30 +0.7
147,414 - ABZR86_RS00745 0.31 -0.7
147,497 + ABZR86_RS00745 0.49 -2.9
147,497 + ABZR86_RS00745 0.49 +0.1
147,497 + ABZR86_RS00745 0.49 -0.3
147,498 - ABZR86_RS00745 0.49 +0.7
147,498 - ABZR86_RS00745 0.49 +1.3
147,498 - ABZR86_RS00745 0.49 -0.0
147,590 + ABZR86_RS00745 0.69 +0.4
147,590 + ABZR86_RS00745 0.69 -1.6
147,591 - ABZR86_RS00745 0.69 +0.1
147,591 - ABZR86_RS00745 0.69 -1.9
147,591 - ABZR86_RS00745 0.69 +0.8
147,591 - ABZR86_RS00745 0.69 +0.5
147,979 + ABZR86_RS00750 0.23 -0.1
147,979 + ABZR86_RS00750 0.23 +0.4
147,979 + ABZR86_RS00750 0.23 +0.0
148,284 + ABZR86_RS00750 0.57 +0.7
148,284 + ABZR86_RS00750 0.57 +0.9
148,285 - ABZR86_RS00750 0.57 -1.5
148,285 - ABZR86_RS00750 0.57 +0.0
148,285 - ABZR86_RS00750 0.57 -0.1
148,443 + ABZR86_RS00750 0.74 +0.6
148,444 - ABZR86_RS00750 0.75 -0.1
148,577 + ABZR86_RS00750 0.89 +2.5
148,577 + ABZR86_RS00750 0.89 -0.5
148,577 + ABZR86_RS00750 0.89 +0.6
148,577 + ABZR86_RS00750 0.89 +0.7
148,577 + ABZR86_RS00750 0.89 +1.9
148,577 + ABZR86_RS00750 0.89 +0.8
148,577 + ABZR86_RS00750 0.89 -0.7
148,578 - ABZR86_RS00750 0.89 +0.8
148,578 - ABZR86_RS00750 0.89 -0.8
148,578 - ABZR86_RS00750 0.89 -1.0
148,578 - ABZR86_RS00750 0.89 +0.5
148,614 + -0.0
148,615 - -0.5
148,751 - -1.6
148,795 + +1.2
148,795 + -0.4
148,796 - +0.8
148,796 - -0.8
148,796 - -0.9
148,796 - -0.1
149,059 + ABZR86_RS00755 0.34 -2.2
149,059 + ABZR86_RS00755 0.34 +0.7
149,059 + ABZR86_RS00755 0.34 -0.0
149,059 + ABZR86_RS00755 0.34 -0.4
149,059 + ABZR86_RS00755 0.34 +0.9
149,059 + ABZR86_RS00755 0.34 -0.7
149,059 + ABZR86_RS00755 0.34 +0.4
149,059 + ABZR86_RS00755 0.34 -0.1
149,059 + ABZR86_RS00755 0.34 +0.0
149,059 + ABZR86_RS00755 0.34 +1.0
149,059 + ABZR86_RS00755 0.34 +0.4
149,059 + ABZR86_RS00755 0.34 -0.9
149,059 + ABZR86_RS00755 0.34 +1.7
149,059 + ABZR86_RS00755 0.34 -0.4
149,059 + ABZR86_RS00755 0.34 -2.9
149,059 + ABZR86_RS00755 0.34 -0.7
149,060 - ABZR86_RS00755 0.34 -0.0
149,060 - ABZR86_RS00755 0.34 +0.5
149,060 - ABZR86_RS00755 0.34 +0.4
149,060 - ABZR86_RS00755 0.34 +0.2
149,060 - ABZR86_RS00755 0.34 +1.8
149,060 - ABZR86_RS00755 0.34 +0.5
149,060 - ABZR86_RS00755 0.34 +0.4
149,060 - ABZR86_RS00755 0.34 -0.9
149,060 - ABZR86_RS00755 0.34 +0.5
149,164 + ABZR86_RS00755 0.46 -0.6
149,165 - ABZR86_RS00755 0.46 +0.4
149,317 + ABZR86_RS00755 0.62 -0.3
149,318 - ABZR86_RS00755 0.62 -0.3
149,329 + ABZR86_RS00755 0.63 +0.1
149,330 - ABZR86_RS00755 0.63 -0.4
149,524 + ABZR86_RS00755 0.84 +0.2
149,524 + ABZR86_RS00755 0.84 +0.5
149,524 + ABZR86_RS00755 0.84 -0.1
149,524 + ABZR86_RS00755 0.84 +0.7
149,524 + ABZR86_RS00755 0.84 -3.3
149,525 - ABZR86_RS00755 0.84 -0.4
149,525 - ABZR86_RS00755 0.84 +0.1
149,525 - ABZR86_RS00755 0.84 -1.3
149,525 - ABZR86_RS00755 0.84 +0.7
149,525 - ABZR86_RS00755 0.84 -2.1
149,525 - ABZR86_RS00755 0.84 +0.2
149,525 - ABZR86_RS00755 0.84 +0.2
149,525 - ABZR86_RS00755 0.84 -0.4
149,525 - ABZR86_RS00755 0.84 -0.2
149,539 + ABZR86_RS00755 0.85 +0.2
149,539 + ABZR86_RS00755 0.85 +0.6
149,539 + ABZR86_RS00755 0.85 -0.0
149,540 - ABZR86_RS00755 0.85 -2.8
149,540 - ABZR86_RS00755 0.85 +0.1
149,540 - ABZR86_RS00755 0.85 -1.5
149,625 + -1.5
149,625 + -0.3
149,626 - -2.2
149,626 - -0.3

Or see this region's nucleotide sequence