Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00400 and ABZR86_RS00405 are separated by 43 nucleotides ABZR86_RS00405 and ABZR86_RS00410 are separated by 127 nucleotides ABZR86_RS00410 and ABZR86_RS00415 are separated by 86 nucleotides
ABZR86_RS00400: ABZR86_RS00400 - GNAT family N-acetyltransferase, at 77,854 to 78,144
_RS00400
ABZR86_RS00405: ABZR86_RS00405 - DUF1345 domain-containing protein, at 78,188 to 78,865
_RS00405
ABZR86_RS00410: ABZR86_RS00410 - YajQ family cyclic di-GMP-binding protein, at 78,993 to 79,475
_RS00410
ABZR86_RS00415: ABZR86_RS00415 - NAD(P)/FAD-dependent oxidoreductase, at 79,562 to 80,740
_RS00415
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.088 kb on + strand, within ABZR86_RS00400 at 78.089 kb on - strand, within ABZR86_RS00400 at 78.121 kb on + strand at 78.122 kb on - strand at 78.154 kb on + strand at 78.242 kb on + strand at 78.371 kb on + strand, within ABZR86_RS00405 at 78.493 kb on - strand, within ABZR86_RS00405 at 78.618 kb on - strand, within ABZR86_RS00405 at 78.630 kb on - strand, within ABZR86_RS00405 at 78.630 kb on - strand, within ABZR86_RS00405 at 78.693 kb on - strand, within ABZR86_RS00405 at 78.707 kb on + strand, within ABZR86_RS00405 at 78.767 kb on + strand, within ABZR86_RS00405 at 78.888 kb on - strand at 78.976 kb on - strand at 78.976 kb on - strand at 79.373 kb on + strand, within ABZR86_RS00410 at 79.569 kb on + strand at 79.575 kb on + strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.576 kb on - strand at 79.742 kb on + strand, within ABZR86_RS00415 at 79.743 kb on - strand, within ABZR86_RS00415 at 79.787 kb on + strand, within ABZR86_RS00415 at 80.104 kb on + strand, within ABZR86_RS00415 at 80.105 kb on - strand, within ABZR86_RS00415 at 80.203 kb on - strand, within ABZR86_RS00415 at 80.203 kb on - strand, within ABZR86_RS00415 at 80.294 kb on + strand, within ABZR86_RS00415
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 78,088 + ABZR86_RS00400 0.80 -1.1 78,089 - ABZR86_RS00400 0.81 +0.5 78,121 + +0.5 78,122 - +0.5 78,154 + +0.2 78,242 + +0.1 78,371 + ABZR86_RS00405 0.27 -0.4 78,493 - ABZR86_RS00405 0.45 -0.5 78,618 - ABZR86_RS00405 0.63 -0.1 78,630 - ABZR86_RS00405 0.65 +0.2 78,630 - ABZR86_RS00405 0.65 +0.3 78,693 - ABZR86_RS00405 0.74 -0.2 78,707 + ABZR86_RS00405 0.77 +0.6 78,767 + ABZR86_RS00405 0.85 -3.4 78,888 - +0.9 78,976 - +1.9 78,976 - -3.2 79,373 + ABZR86_RS00410 0.79 +1.3 79,569 + +0.2 79,575 + +0.6 79,576 - -1.8 79,576 - +0.6 79,576 - -2.2 79,576 - +0.1 79,576 - +1.0 79,576 - -0.8 79,576 - +1.5 79,742 + ABZR86_RS00415 0.15 -0.0 79,743 - ABZR86_RS00415 0.15 -1.2 79,787 + ABZR86_RS00415 0.19 +2.5 80,104 + ABZR86_RS00415 0.46 +1.1 80,105 - ABZR86_RS00415 0.46 +0.1 80,203 - ABZR86_RS00415 0.54 -0.9 80,203 - ABZR86_RS00415 0.54 -0.3 80,294 + ABZR86_RS00415 0.62 +1.7
Or see this region's nucleotide sequence