Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3114

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3113 and DvMF_3114 are separated by 157 nucleotidesDvMF_3114 and DvMF_3115 are separated by 158 nucleotides DvMF_3113: DvMF_3113 - protein of unknown function DUF115 (RefSeq), at 3,925,819 to 3,927,588 _3113 DvMF_3114: DvMF_3114 - hypothetical protein (RefSeq), at 3,927,746 to 3,930,994 _3114 DvMF_3115: DvMF_3115 - nitroreductase (RefSeq), at 3,931,153 to 3,931,977 _3115 Position (kb) 3927 3928 3929 3930 3931Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3926.937 kb on - strand, within DvMF_3113at 3927.244 kb on + strand, within DvMF_3113at 3927.356 kb on + strand, within DvMF_3113at 3927.527 kb on + strandat 3927.535 kb on - strandat 3927.657 kb on + strandat 3927.827 kb on - strandat 3928.284 kb on + strand, within DvMF_3114at 3928.300 kb on + strand, within DvMF_3114at 3928.302 kb on - strand, within DvMF_3114at 3928.429 kb on - strand, within DvMF_3114at 3928.650 kb on + strand, within DvMF_3114at 3928.869 kb on + strand, within DvMF_3114at 3928.950 kb on + strand, within DvMF_3114at 3929.022 kb on + strand, within DvMF_3114at 3929.069 kb on - strand, within DvMF_3114at 3929.224 kb on + strand, within DvMF_3114at 3929.281 kb on - strand, within DvMF_3114at 3929.349 kb on - strand, within DvMF_3114at 3929.394 kb on + strand, within DvMF_3114at 3929.703 kb on + strand, within DvMF_3114at 3929.711 kb on - strand, within DvMF_3114at 3929.748 kb on - strand, within DvMF_3114at 3929.748 kb on - strand, within DvMF_3114at 3929.873 kb on - strand, within DvMF_3114at 3929.888 kb on + strand, within DvMF_3114at 3929.893 kb on + strand, within DvMF_3114at 3929.967 kb on + strand, within DvMF_3114at 3930.796 kb on - strandat 3930.845 kb on + strandat 3930.845 kb on + strandat 3930.845 kb on + strandat 3931.341 kb on + strand, within DvMF_3115at 3931.490 kb on - strand, within DvMF_3115at 3931.617 kb on + strand, within DvMF_3115

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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3,926,937 - DvMF_3113 0.63 -0.4
3,927,244 + DvMF_3113 0.81 +0.0
3,927,356 + DvMF_3113 0.87 +0.6
3,927,527 + -0.2
3,927,535 - -0.4
3,927,657 + -0.2
3,927,827 - -0.8
3,928,284 + DvMF_3114 0.17 -0.1
3,928,300 + DvMF_3114 0.17 -0.4
3,928,302 - DvMF_3114 0.17 -0.2
3,928,429 - DvMF_3114 0.21 -0.5
3,928,650 + DvMF_3114 0.28 -0.4
3,928,869 + DvMF_3114 0.35 -5.9
3,928,950 + DvMF_3114 0.37 -4.0
3,929,022 + DvMF_3114 0.39 -5.9
3,929,069 - DvMF_3114 0.41 -3.9
3,929,224 + DvMF_3114 0.45 -4.2
3,929,281 - DvMF_3114 0.47 -4.1
3,929,349 - DvMF_3114 0.49 -4.6
3,929,394 + DvMF_3114 0.51 -3.6
3,929,703 + DvMF_3114 0.60 -4.0
3,929,711 - DvMF_3114 0.60 -3.7
3,929,748 - DvMF_3114 0.62 -5.1
3,929,748 - DvMF_3114 0.62 -3.2
3,929,873 - DvMF_3114 0.65 -7.3
3,929,888 + DvMF_3114 0.66 -4.8
3,929,893 + DvMF_3114 0.66 -1.8
3,929,967 + DvMF_3114 0.68 -4.1
3,930,796 - -5.9
3,930,845 + -2.8
3,930,845 + -2.5
3,930,845 + -6.0
3,931,341 + DvMF_3115 0.23 -0.3
3,931,490 - DvMF_3115 0.41 -0.7
3,931,617 + DvMF_3115 0.56 -0.8

Or see this region's nucleotide sequence