Experiment: MoYLS4 with Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3110 and DvMF_3111 are separated by 248 nucleotides DvMF_3111 and DvMF_3112 are separated by 192 nucleotides DvMF_3112 and DvMF_3113 are separated by 34 nucleotides
DvMF_3110: DvMF_3110 - no description, at 3,923,002 to 3,923,571
_3110
DvMF_3111: DvMF_3111 - MATE efflux family protein (RefSeq), at 3,923,820 to 3,925,289
_3111
DvMF_3112: DvMF_3112 - protein of unknown function DUF77 (RefSeq), at 3,925,482 to 3,925,784
_3112
DvMF_3113: DvMF_3113 - protein of unknown function DUF115 (RefSeq), at 3,925,819 to 3,927,588
_3113
Position (kb)
3923
3924
3925
3926 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3923.563 kb on - strand at 3923.563 kb on - strand at 3923.601 kb on + strand at 3923.721 kb on + strand at 3923.821 kb on - strand at 3923.883 kb on + strand at 3923.939 kb on - strand at 3924.114 kb on - strand, within DvMF_3111 at 3924.118 kb on + strand, within DvMF_3111 at 3924.744 kb on - strand, within DvMF_3111 at 3925.283 kb on + strand at 3925.487 kb on - strand at 3925.573 kb on - strand, within DvMF_3112 at 3925.876 kb on - strand at 3925.977 kb on + strand at 3926.055 kb on + strand, within DvMF_3113 at 3926.094 kb on - strand, within DvMF_3113 at 3926.166 kb on + strand, within DvMF_3113 at 3926.256 kb on - strand, within DvMF_3113 at 3926.287 kb on - strand, within DvMF_3113
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml remove 3,923,563 - -3.7 3,923,563 - -0.9 3,923,601 + -1.0 3,923,721 + -0.1 3,923,821 - +0.7 3,923,883 + +0.0 3,923,939 - -1.2 3,924,114 - DvMF_3111 0.20 -0.2 3,924,118 + DvMF_3111 0.20 -0.5 3,924,744 - DvMF_3111 0.63 -0.7 3,925,283 + -0.0 3,925,487 - -0.7 3,925,573 - DvMF_3112 0.30 -0.4 3,925,876 - +0.2 3,925,977 + -0.5 3,926,055 + DvMF_3113 0.13 +0.1 3,926,094 - DvMF_3113 0.16 -0.5 3,926,166 + DvMF_3113 0.20 -0.3 3,926,256 - DvMF_3113 0.25 -0.6 3,926,287 - DvMF_3113 0.26 -2.7
Or see this region's nucleotide sequence