Experiment: MoYLS4 with Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2859 and DvMF_2860 are separated by 265 nucleotides DvMF_2860 and DvMF_2861 are separated by 227 nucleotides DvMF_2861 and DvMF_2862 are separated by 182 nucleotides DvMF_2862 and DvMF_2863 are separated by 235 nucleotides
DvMF_2859: DvMF_2859 - hypothetical protein (RefSeq), at 3,610,877 to 3,611,665
_2859
DvMF_2860: DvMF_2860 - response regulator receiver protein (RefSeq), at 3,611,931 to 3,612,329
_2860
DvMF_2861: DvMF_2861 - import inner membrane translocase subunit Tim44 (RefSeq), at 3,612,557 to 3,613,483
_2861
DvMF_2862: DvMF_2862 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 3,613,666 to 3,614,157
_2862
DvMF_2863: DvMF_2863 - AsmA family protein (RefSeq), at 3,614,393 to 3,616,528
_2863
Position (kb)
3612
3613
3614 Strain fitness (log2 ratio)
-1
0
1 at 3611.736 kb on - strand at 3611.976 kb on + strand, within DvMF_2860 at 3612.318 kb on - strand at 3612.690 kb on + strand, within DvMF_2861 at 3612.698 kb on - strand, within DvMF_2861 at 3612.706 kb on + strand, within DvMF_2861 at 3612.984 kb on + strand, within DvMF_2861 at 3613.182 kb on + strand, within DvMF_2861 at 3613.759 kb on - strand, within DvMF_2862 at 3614.016 kb on - strand, within DvMF_2862 at 3614.138 kb on + strand at 3614.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml remove 3,611,736 - -0.1 3,611,976 + DvMF_2860 0.11 +0.2 3,612,318 - +0.4 3,612,690 + DvMF_2861 0.14 -0.3 3,612,698 - DvMF_2861 0.15 -0.1 3,612,706 + DvMF_2861 0.16 +0.2 3,612,984 + DvMF_2861 0.46 -0.4 3,613,182 + DvMF_2861 0.67 -0.1 3,613,759 - DvMF_2862 0.19 -1.0 3,614,016 - DvMF_2862 0.71 -0.5 3,614,138 + -0.5 3,614,218 + -0.3
Or see this region's nucleotide sequence