Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2861

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2859 and DvMF_2860 are separated by 265 nucleotidesDvMF_2860 and DvMF_2861 are separated by 227 nucleotidesDvMF_2861 and DvMF_2862 are separated by 182 nucleotidesDvMF_2862 and DvMF_2863 are separated by 235 nucleotides DvMF_2859: DvMF_2859 - hypothetical protein (RefSeq), at 3,610,877 to 3,611,665 _2859 DvMF_2860: DvMF_2860 - response regulator receiver protein (RefSeq), at 3,611,931 to 3,612,329 _2860 DvMF_2861: DvMF_2861 - import inner membrane translocase subunit Tim44 (RefSeq), at 3,612,557 to 3,613,483 _2861 DvMF_2862: DvMF_2862 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 3,613,666 to 3,614,157 _2862 DvMF_2863: DvMF_2863 - AsmA family protein (RefSeq), at 3,614,393 to 3,616,528 _2863 Position (kb) 3612 3613 3614Strain fitness (log2 ratio) -1 0 1at 3611.736 kb on - strandat 3611.976 kb on + strand, within DvMF_2860at 3612.318 kb on - strandat 3612.690 kb on + strand, within DvMF_2861at 3612.698 kb on - strand, within DvMF_2861at 3612.706 kb on + strand, within DvMF_2861at 3612.984 kb on + strand, within DvMF_2861at 3613.182 kb on + strand, within DvMF_2861at 3613.759 kb on - strand, within DvMF_2862at 3614.016 kb on - strand, within DvMF_2862at 3614.138 kb on + strandat 3614.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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3,611,736 - -0.1
3,611,976 + DvMF_2860 0.11 +0.2
3,612,318 - +0.4
3,612,690 + DvMF_2861 0.14 -0.3
3,612,698 - DvMF_2861 0.15 -0.1
3,612,706 + DvMF_2861 0.16 +0.2
3,612,984 + DvMF_2861 0.46 -0.4
3,613,182 + DvMF_2861 0.67 -0.1
3,613,759 - DvMF_2862 0.19 -1.0
3,614,016 - DvMF_2862 0.71 -0.5
3,614,138 + -0.5
3,614,218 + -0.3

Or see this region's nucleotide sequence