Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2763

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2762 and DvMF_2763 are separated by 460 nucleotidesDvMF_2763 and DvMF_2764 are separated by 53 nucleotides DvMF_2762: DvMF_2762 - diguanylate cyclase with hemerythrin-like metal-binding domain (RefSeq), at 3,492,524 to 3,494,419 _2762 DvMF_2763: DvMF_2763 - ABC-type tungstate transport system, permease component (RefSeq), at 3,494,880 to 3,495,704 _2763 DvMF_2764: DvMF_2764 - hypothetical protein (RefSeq), at 3,495,758 to 3,497,035 _2764 Position (kb) 3494 3495 3496Strain fitness (log2 ratio) -1 0 1 2 3at 3493.908 kb on + strand, within DvMF_2762at 3493.916 kb on - strand, within DvMF_2762at 3493.916 kb on - strand, within DvMF_2762at 3493.916 kb on - strand, within DvMF_2762at 3494.144 kb on - strand, within DvMF_2762at 3494.265 kb on - strandat 3494.286 kb on - strandat 3494.429 kb on - strandat 3494.472 kb on + strandat 3494.472 kb on + strandat 3494.480 kb on - strandat 3494.664 kb on + strandat 3494.665 kb on - strandat 3494.957 kb on - strandat 3494.957 kb on - strandat 3495.097 kb on - strand, within DvMF_2763at 3495.107 kb on - strand, within DvMF_2763at 3495.216 kb on - strand, within DvMF_2763at 3495.320 kb on + strand, within DvMF_2763at 3495.430 kb on - strand, within DvMF_2763at 3495.568 kb on - strand, within DvMF_2763at 3495.729 kb on + strandat 3495.915 kb on - strand, within DvMF_2764at 3495.961 kb on + strand, within DvMF_2764at 3496.558 kb on - strand, within DvMF_2764at 3496.656 kb on + strand, within DvMF_2764

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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3,493,908 + DvMF_2762 0.73 +0.0
3,493,916 - DvMF_2762 0.73 -0.1
3,493,916 - DvMF_2762 0.73 -0.1
3,493,916 - DvMF_2762 0.73 -0.9
3,494,144 - DvMF_2762 0.85 -0.9
3,494,265 - -0.6
3,494,286 - -0.2
3,494,429 - -0.5
3,494,472 + -0.4
3,494,472 + -0.7
3,494,480 - -0.1
3,494,664 + -0.6
3,494,665 - -0.4
3,494,957 - -0.5
3,494,957 - -0.6
3,495,097 - DvMF_2763 0.26 -0.6
3,495,107 - DvMF_2763 0.28 +2.8
3,495,216 - DvMF_2763 0.41 -0.5
3,495,320 + DvMF_2763 0.53 +0.6
3,495,430 - DvMF_2763 0.67 -0.3
3,495,568 - DvMF_2763 0.83 -0.5
3,495,729 + +0.1
3,495,915 - DvMF_2764 0.12 +0.6
3,495,961 + DvMF_2764 0.16 +0.4
3,496,558 - DvMF_2764 0.63 +0.7
3,496,656 + DvMF_2764 0.70 +2.7

Or see this region's nucleotide sequence