Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2760

Experiment: MoYLS4 with Bacitracin 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2760 and DvMF_2761 are separated by 262 nucleotidesDvMF_2761 and DvMF_2762 are separated by 209 nucleotides DvMF_2760: DvMF_2760 - hypothetical protein (RefSeq), at 3,490,625 to 3,491,650 _2760 DvMF_2761: DvMF_2761 - hypothetical protein (RefSeq), at 3,491,913 to 3,492,314 _2761 DvMF_2762: DvMF_2762 - diguanylate cyclase with hemerythrin-like metal-binding domain (RefSeq), at 3,492,524 to 3,494,419 _2762 Position (kb) 3490 3491 3492Strain fitness (log2 ratio) -1 0 1at 3489.626 kb on + strandat 3489.660 kb on + strandat 3489.668 kb on - strandat 3489.680 kb on + strandat 3489.893 kb on - strandat 3489.893 kb on - strandat 3489.903 kb on - strandat 3490.123 kb on + strandat 3490.287 kb on + strandat 3490.743 kb on + strand, within DvMF_2760at 3490.751 kb on - strand, within DvMF_2760at 3490.751 kb on - strand, within DvMF_2760at 3490.911 kb on - strand, within DvMF_2760at 3491.076 kb on + strand, within DvMF_2760at 3491.475 kb on - strand, within DvMF_2760at 3491.521 kb on - strand, within DvMF_2760at 3491.591 kb on - strandat 3491.683 kb on - strandat 3491.903 kb on + strandat 3491.970 kb on + strand, within DvMF_2761at 3492.574 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
remove
3,489,626 + -1.5
3,489,660 + -0.7
3,489,668 - -1.3
3,489,680 + -0.3
3,489,893 - -0.9
3,489,893 - -0.5
3,489,903 - -0.8
3,490,123 + -0.7
3,490,287 + -0.2
3,490,743 + DvMF_2760 0.12 -0.3
3,490,751 - DvMF_2760 0.12 -0.4
3,490,751 - DvMF_2760 0.12 -1.0
3,490,911 - DvMF_2760 0.28 -0.6
3,491,076 + DvMF_2760 0.44 -0.5
3,491,475 - DvMF_2760 0.83 -0.4
3,491,521 - DvMF_2760 0.87 -0.4
3,491,591 - -0.8
3,491,683 - -0.9
3,491,903 + -0.1
3,491,970 + DvMF_2761 0.14 -0.7
3,492,574 - -0.5

Or see this region's nucleotide sequence