Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2758

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttgt and DvMF_2758 are separated by 312 nucleotidesDvMF_2758 and DvMF_2759 are separated by 705 nucleotides DvMF_2757: tgt - queuine tRNA-ribosyltransferase (RefSeq), at 3,482,971 to 3,484,131 tgt DvMF_2758: DvMF_2758 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 3,484,444 to 3,486,540 _2758 DvMF_2759: DvMF_2759 - protein of unknown function DUF255 (RefSeq), at 3,487,246 to 3,489,516 _2759 Position (kb) 3484 3485 3486 3487Strain fitness (log2 ratio) -2 -1 0 1at 3483.471 kb on + strand, within tgtat 3483.471 kb on + strand, within tgtat 3483.479 kb on - strand, within tgtat 3483.585 kb on + strand, within tgtat 3483.965 kb on + strand, within tgtat 3484.071 kb on + strandat 3485.245 kb on + strand, within DvMF_2758at 3485.457 kb on - strand, within DvMF_2758at 3485.632 kb on + strand, within DvMF_2758at 3485.693 kb on + strand, within DvMF_2758at 3485.933 kb on + strand, within DvMF_2758at 3486.097 kb on - strand, within DvMF_2758at 3486.193 kb on - strand, within DvMF_2758at 3486.202 kb on - strand, within DvMF_2758at 3486.389 kb on - strandat 3486.485 kb on + strandat 3486.567 kb on - strandat 3486.992 kb on - strandat 3487.043 kb on + strandat 3487.086 kb on + strandat 3487.086 kb on + strandat 3487.098 kb on + strandat 3487.176 kb on - strandat 3487.370 kb on - strandat 3487.390 kb on - strandat 3487.468 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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3,483,471 + tgt DvMF_2757 0.43 -1.3
3,483,471 + tgt DvMF_2757 0.43 -1.7
3,483,479 - tgt DvMF_2757 0.44 -1.7
3,483,585 + tgt DvMF_2757 0.53 -1.8
3,483,965 + tgt DvMF_2757 0.86 -2.6
3,484,071 + -0.7
3,485,245 + DvMF_2758 0.38 -0.6
3,485,457 - DvMF_2758 0.48 -0.9
3,485,632 + DvMF_2758 0.57 -0.2
3,485,693 + DvMF_2758 0.60 -1.5
3,485,933 + DvMF_2758 0.71 -0.6
3,486,097 - DvMF_2758 0.79 -0.6
3,486,193 - DvMF_2758 0.83 -0.7
3,486,202 - DvMF_2758 0.84 +0.1
3,486,389 - -0.8
3,486,485 + +0.5
3,486,567 - -0.5
3,486,992 - -0.5
3,487,043 + -0.4
3,487,086 + -1.7
3,487,086 + -0.8
3,487,098 + -0.8
3,487,176 - -0.5
3,487,370 - -1.2
3,487,390 - -0.3
3,487,468 + +0.2

Or see this region's nucleotide sequence