Experiment: MoYLS4 with Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2738 and DvMF_2739 are separated by 2 nucleotides DvMF_2739 and DvMF_2740 are separated by 12 nucleotides DvMF_2740 and DvMF_2741 overlap by 4 nucleotides
DvMF_2738: DvMF_2738 - type II secretion system protein E (RefSeq), at 3,463,715 to 3,465,589
_2738
DvMF_2739: DvMF_2739 - response regulator receiver protein (RefSeq), at 3,465,592 to 3,467,037
_2739
DvMF_2740: DvMF_2740 - hypothetical protein (RefSeq), at 3,467,050 to 3,467,376
_2740
DvMF_2741: DvMF_2741 - type II and III secretion system protein (RefSeq), at 3,467,373 to 3,468,854
_2741
Position (kb)
3465
3466
3467
3468 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3464.728 kb on + strand, within DvMF_2738 at 3464.781 kb on - strand, within DvMF_2738 at 3465.015 kb on + strand, within DvMF_2738 at 3465.194 kb on + strand, within DvMF_2738 at 3465.399 kb on - strand, within DvMF_2738 at 3465.417 kb on - strand at 3465.453 kb on + strand at 3465.535 kb on - strand at 3465.597 kb on + strand at 3465.851 kb on + strand, within DvMF_2739 at 3465.938 kb on - strand, within DvMF_2739 at 3466.248 kb on + strand, within DvMF_2739 at 3466.248 kb on + strand, within DvMF_2739 at 3466.256 kb on - strand, within DvMF_2739 at 3466.264 kb on - strand, within DvMF_2739 at 3466.444 kb on + strand, within DvMF_2739 at 3466.846 kb on + strand, within DvMF_2739 at 3467.219 kb on + strand, within DvMF_2740 at 3467.260 kb on - strand, within DvMF_2740 at 3467.386 kb on + strand at 3467.393 kb on - strand at 3467.459 kb on - strand at 3467.619 kb on - strand, within DvMF_2741 at 3467.748 kb on + strand, within DvMF_2741
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml remove 3,464,728 + DvMF_2738 0.54 -0.8 3,464,781 - DvMF_2738 0.57 -0.7 3,465,015 + DvMF_2738 0.69 -0.4 3,465,194 + DvMF_2738 0.79 +2.1 3,465,399 - DvMF_2738 0.90 -1.0 3,465,417 - -1.0 3,465,453 + -0.2 3,465,535 - -0.2 3,465,597 + -0.2 3,465,851 + DvMF_2739 0.18 +0.1 3,465,938 - DvMF_2739 0.24 -0.4 3,466,248 + DvMF_2739 0.45 +0.9 3,466,248 + DvMF_2739 0.45 -1.0 3,466,256 - DvMF_2739 0.46 -0.2 3,466,264 - DvMF_2739 0.46 -0.9 3,466,444 + DvMF_2739 0.59 -0.4 3,466,846 + DvMF_2739 0.87 -0.1 3,467,219 + DvMF_2740 0.52 -1.4 3,467,260 - DvMF_2740 0.64 -1.4 3,467,386 + -0.6 3,467,393 - -0.9 3,467,459 - -0.8 3,467,619 - DvMF_2741 0.17 -1.4 3,467,748 + DvMF_2741 0.25 -2.2
Or see this region's nucleotide sequence