Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2683

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2682 and DvMF_2683 are separated by 347 nucleotidesDvMF_2683 and DvMF_2684 are separated by 62 nucleotides DvMF_2682: DvMF_2682 - Membrane-bound lytic murein transglycosylase B-like protein (RefSeq), at 3,390,230 to 3,391,501 _2682 DvMF_2683: DvMF_2683 - multi-sensor hybrid histidine kinase (RefSeq), at 3,391,849 to 3,395,925 _2683 DvMF_2684: DvMF_2684 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,395,988 to 3,397,061 _2684 Position (kb) 3391 3392 3393 3394 3395 3396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3390.878 kb on + strand, within DvMF_2682at 3391.148 kb on - strand, within DvMF_2682at 3391.190 kb on - strand, within DvMF_2682at 3391.197 kb on - strand, within DvMF_2682at 3391.318 kb on - strand, within DvMF_2682at 3391.420 kb on + strandat 3391.420 kb on - strandat 3391.435 kb on + strandat 3391.435 kb on + strandat 3391.435 kb on + strandat 3391.442 kb on + strandat 3391.443 kb on - strandat 3391.443 kb on - strandat 3391.545 kb on - strandat 3391.580 kb on + strandat 3391.799 kb on - strandat 3391.841 kb on - strandat 3391.842 kb on - strandat 3391.843 kb on + strandat 3391.969 kb on + strandat 3392.175 kb on - strandat 3392.177 kb on + strandat 3392.180 kb on - strandat 3392.186 kb on + strandat 3392.456 kb on + strand, within DvMF_2683at 3392.473 kb on + strand, within DvMF_2683at 3392.607 kb on - strand, within DvMF_2683at 3392.820 kb on + strand, within DvMF_2683at 3392.877 kb on + strand, within DvMF_2683at 3393.376 kb on + strand, within DvMF_2683at 3393.516 kb on - strand, within DvMF_2683at 3393.661 kb on - strand, within DvMF_2683at 3393.986 kb on - strand, within DvMF_2683at 3394.213 kb on - strand, within DvMF_2683at 3394.218 kb on - strand, within DvMF_2683at 3394.431 kb on - strand, within DvMF_2683at 3394.436 kb on - strand, within DvMF_2683at 3394.884 kb on - strand, within DvMF_2683at 3394.895 kb on - strand, within DvMF_2683at 3395.159 kb on + strand, within DvMF_2683at 3395.328 kb on - strand, within DvMF_2683at 3395.648 kb on - strandat 3395.977 kb on - strandat 3396.057 kb on + strandat 3396.090 kb on + strandat 3396.266 kb on + strand, within DvMF_2684at 3396.346 kb on + strand, within DvMF_2684at 3396.356 kb on + strand, within DvMF_2684at 3396.453 kb on + strand, within DvMF_2684at 3396.456 kb on - strand, within DvMF_2684at 3396.744 kb on + strand, within DvMF_2684at 3396.861 kb on - strand, within DvMF_2684at 3396.861 kb on - strand, within DvMF_2684

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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3,390,878 + DvMF_2682 0.51 -0.9
3,391,148 - DvMF_2682 0.72 -2.9
3,391,190 - DvMF_2682 0.75 -2.1
3,391,197 - DvMF_2682 0.76 -2.7
3,391,318 - DvMF_2682 0.86 -1.8
3,391,420 + -0.7
3,391,420 - -0.3
3,391,435 + -0.6
3,391,435 + -0.7
3,391,435 + +1.3
3,391,442 + -0.8
3,391,443 - +2.6
3,391,443 - -0.2
3,391,545 - -0.1
3,391,580 + -0.6
3,391,799 - -0.5
3,391,841 - +0.2
3,391,842 - -1.4
3,391,843 + +2.2
3,391,969 + -1.3
3,392,175 - -1.0
3,392,177 + -0.9
3,392,180 - -0.2
3,392,186 + +2.0
3,392,456 + DvMF_2683 0.15 -0.2
3,392,473 + DvMF_2683 0.15 -0.8
3,392,607 - DvMF_2683 0.19 -0.7
3,392,820 + DvMF_2683 0.24 -0.5
3,392,877 + DvMF_2683 0.25 -0.8
3,393,376 + DvMF_2683 0.37 -1.2
3,393,516 - DvMF_2683 0.41 -0.6
3,393,661 - DvMF_2683 0.44 +0.7
3,393,986 - DvMF_2683 0.52 -0.6
3,394,213 - DvMF_2683 0.58 -0.5
3,394,218 - DvMF_2683 0.58 -0.2
3,394,431 - DvMF_2683 0.63 -0.7
3,394,436 - DvMF_2683 0.63 -0.4
3,394,884 - DvMF_2683 0.74 -1.2
3,394,895 - DvMF_2683 0.75 -0.6
3,395,159 + DvMF_2683 0.81 -0.5
3,395,328 - DvMF_2683 0.85 -0.6
3,395,648 - +0.1
3,395,977 - -0.4
3,396,057 + +0.0
3,396,090 + -0.8
3,396,266 + DvMF_2684 0.26 -0.7
3,396,346 + DvMF_2684 0.33 -1.0
3,396,356 + DvMF_2684 0.34 -0.6
3,396,453 + DvMF_2684 0.43 -0.7
3,396,456 - DvMF_2684 0.44 -0.4
3,396,744 + DvMF_2684 0.70 -0.7
3,396,861 - DvMF_2684 0.81 -0.2
3,396,861 - DvMF_2684 0.81 -0.7

Or see this region's nucleotide sequence