Experiment: MoYLS4 with Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2640 and DvMF_2641 are separated by 247 nucleotides DvMF_2641 and DvMF_2642 are separated by 175 nucleotides DvMF_2642 and DvMF_2643 are separated by 515 nucleotides
DvMF_2640: DvMF_2640 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,337,856 to 3,340,723
_2640
DvMF_2641: DvMF_2641 - twin-arginine translocation protein, TatA/E family subunit (RefSeq), at 3,340,971 to 3,341,144
_2641
DvMF_2642: DvMF_2642 - hypothetical protein (RefSeq), at 3,341,320 to 3,342,693
_2642
DvMF_2643: DvMF_2643 - response regulator receiver modulated CheW protein (RefSeq), at 3,343,209 to 3,344,381
_2643
Position (kb)
3341
3342
3343 Strain fitness (log2 ratio)
-2
-1
0
1 at 3340.349 kb on + strand, within DvMF_2640 at 3340.349 kb on + strand, within DvMF_2640 at 3340.429 kb on + strand, within DvMF_2640 at 3340.759 kb on + strand at 3341.216 kb on + strand at 3341.414 kb on + strand at 3341.482 kb on + strand, within DvMF_2642 at 3341.688 kb on + strand, within DvMF_2642 at 3341.695 kb on - strand, within DvMF_2642 at 3341.734 kb on + strand, within DvMF_2642 at 3341.889 kb on - strand, within DvMF_2642 at 3342.044 kb on - strand, within DvMF_2642 at 3342.135 kb on + strand, within DvMF_2642 at 3342.225 kb on - strand, within DvMF_2642 at 3342.340 kb on - strand, within DvMF_2642 at 3342.612 kb on + strand at 3343.053 kb on - strand at 3343.090 kb on + strand at 3343.217 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml remove 3,340,349 + DvMF_2640 0.87 -1.9 3,340,349 + DvMF_2640 0.87 -1.9 3,340,429 + DvMF_2640 0.90 -1.1 3,340,759 + -0.4 3,341,216 + -0.1 3,341,414 + -0.8 3,341,482 + DvMF_2642 0.12 -0.5 3,341,688 + DvMF_2642 0.27 -1.4 3,341,695 - DvMF_2642 0.27 -0.5 3,341,734 + DvMF_2642 0.30 -0.9 3,341,889 - DvMF_2642 0.41 -0.6 3,342,044 - DvMF_2642 0.53 -0.8 3,342,135 + DvMF_2642 0.59 -0.5 3,342,225 - DvMF_2642 0.66 -0.7 3,342,340 - DvMF_2642 0.74 +0.1 3,342,612 + -0.9 3,343,053 - -1.1 3,343,090 + -0.8 3,343,217 + -0.8
Or see this region's nucleotide sequence