Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2521

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgH and flgI are separated by 843 nucleotidesflgI and DvMF_2522 are separated by 207 nucleotides DvMF_2520: flgH - flagellar basal body L-ring protein (RefSeq), at 3,177,039 to 3,177,755 flgH DvMF_2521: flgI - flagellar basal body P-ring protein (RefSeq), at 3,178,599 to 3,179,723 flgI DvMF_2522: DvMF_2522 - Peptidase M23 (RefSeq), at 3,179,931 to 3,181,748 _2522 Position (kb) 3178 3179 3180Strain fitness (log2 ratio) -1 0 1 2 3at 3177.748 kb on - strandat 3177.921 kb on - strandat 3178.297 kb on + strandat 3178.400 kb on + strandat 3178.764 kb on - strand, within flgIat 3178.821 kb on - strand, within flgIat 3178.940 kb on + strand, within flgIat 3178.944 kb on - strand, within flgIat 3179.028 kb on + strand, within flgIat 3179.028 kb on + strand, within flgIat 3179.094 kb on + strand, within flgIat 3179.165 kb on + strand, within flgIat 3179.173 kb on - strand, within flgIat 3179.467 kb on + strand, within flgIat 3179.902 kb on - strandat 3179.915 kb on + strandat 3179.991 kb on - strandat 3180.057 kb on - strandat 3180.121 kb on - strand, within DvMF_2522at 3180.173 kb on + strand, within DvMF_2522at 3180.184 kb on + strand, within DvMF_2522at 3180.624 kb on + strand, within DvMF_2522

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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3,177,748 - +1.5
3,177,921 - -0.3
3,178,297 + -1.6
3,178,400 + +0.1
3,178,764 - flgI DvMF_2521 0.15 +2.8
3,178,821 - flgI DvMF_2521 0.20 +2.5
3,178,940 + flgI DvMF_2521 0.30 +2.5
3,178,944 - flgI DvMF_2521 0.31 +2.4
3,179,028 + flgI DvMF_2521 0.38 +2.5
3,179,028 + flgI DvMF_2521 0.38 +2.4
3,179,094 + flgI DvMF_2521 0.44 +2.2
3,179,165 + flgI DvMF_2521 0.50 +2.5
3,179,173 - flgI DvMF_2521 0.51 +2.3
3,179,467 + flgI DvMF_2521 0.77 +2.6
3,179,902 - +0.2
3,179,915 + -0.6
3,179,991 - +2.0
3,180,057 - +2.3
3,180,121 - DvMF_2522 0.10 +2.1
3,180,173 + DvMF_2522 0.13 +1.9
3,180,184 + DvMF_2522 0.14 +2.3
3,180,624 + DvMF_2522 0.38 -0.2

Or see this region's nucleotide sequence