Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2445

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2444 and DvMF_2445 are separated by 193 nucleotidesDvMF_2445 and DvMF_2446 are separated by 479 nucleotides DvMF_2444: DvMF_2444 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,077,664 to 3,078,584 _2444 DvMF_2445: DvMF_2445 - HPP family protein (RefSeq), at 3,078,778 to 3,079,386 _2445 DvMF_2446: DvMF_2446 - phenylacetate-coenzyme A ligase, putative (RefSeq), at 3,079,866 to 3,081,131 _2446 Position (kb) 3078 3079 3080Strain fitness (log2 ratio) -1 0 1 2 3at 3077.851 kb on + strand, within DvMF_2444at 3077.870 kb on + strand, within DvMF_2444at 3078.040 kb on + strand, within DvMF_2444at 3078.145 kb on - strand, within DvMF_2444at 3078.162 kb on + strand, within DvMF_2444at 3078.384 kb on - strand, within DvMF_2444at 3078.489 kb on + strand, within DvMF_2444at 3078.664 kb on - strandat 3078.832 kb on + strandat 3079.005 kb on - strand, within DvMF_2445at 3079.102 kb on - strand, within DvMF_2445at 3079.318 kb on - strand, within DvMF_2445at 3079.318 kb on - strand, within DvMF_2445at 3079.323 kb on + strand, within DvMF_2445at 3079.540 kb on + strandat 3079.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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3,077,851 + DvMF_2444 0.20 -0.4
3,077,870 + DvMF_2444 0.22 -0.5
3,078,040 + DvMF_2444 0.41 -0.5
3,078,145 - DvMF_2444 0.52 -0.2
3,078,162 + DvMF_2444 0.54 -0.6
3,078,384 - DvMF_2444 0.78 -0.7
3,078,489 + DvMF_2444 0.90 +2.8
3,078,664 - -0.4
3,078,832 + -0.8
3,079,005 - DvMF_2445 0.37 -0.3
3,079,102 - DvMF_2445 0.53 +0.1
3,079,318 - DvMF_2445 0.89 -1.0
3,079,318 - DvMF_2445 0.89 -1.0
3,079,323 + DvMF_2445 0.89 -1.2
3,079,540 + +0.4
3,079,589 - -0.5

Or see this region's nucleotide sequence