Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2290

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2288 and DvMF_2289 overlap by 14 nucleotidesDvMF_2289 and DvMF_2290 are separated by 61 nucleotidesDvMF_2290 and DvMF_2291 are separated by 249 nucleotides DvMF_2288: DvMF_2288 - flagellar motor switch protein FliG (RefSeq), at 2,876,139 to 2,877,155 _2288 DvMF_2289: DvMF_2289 - flagellar assembly protein FliH, putative (RefSeq), at 2,877,142 to 2,877,906 _2289 DvMF_2290: DvMF_2290 - flagellar protein export ATPase FliI (RefSeq), at 2,877,968 to 2,879,374 _2290 DvMF_2291: DvMF_2291 - phosphoesterase PA-phosphatase related (RefSeq), at 2,879,624 to 2,880,376 _2291 Position (kb) 2877 2878 2879 2880Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2876.977 kb on - strand, within DvMF_2288at 2877.330 kb on + strand, within DvMF_2289at 2877.354 kb on - strand, within DvMF_2289at 2877.360 kb on - strand, within DvMF_2289at 2877.673 kb on - strand, within DvMF_2289at 2877.730 kb on + strand, within DvMF_2289at 2877.949 kb on - strandat 2877.964 kb on + strandat 2878.154 kb on + strand, within DvMF_2290at 2878.164 kb on - strand, within DvMF_2290at 2878.399 kb on - strand, within DvMF_2290at 2878.866 kb on + strand, within DvMF_2290at 2878.905 kb on - strand, within DvMF_2290at 2878.905 kb on - strand, within DvMF_2290at 2879.295 kb on - strandat 2879.713 kb on + strand, within DvMF_2291at 2879.729 kb on - strand, within DvMF_2291at 2879.729 kb on - strand, within DvMF_2291at 2879.914 kb on - strand, within DvMF_2291at 2879.988 kb on - strand, within DvMF_2291at 2880.082 kb on - strand, within DvMF_2291at 2880.176 kb on + strand, within DvMF_2291at 2880.184 kb on - strand, within DvMF_2291at 2880.328 kb on + strandat 2880.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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2,876,977 - DvMF_2288 0.82 +2.3
2,877,330 + DvMF_2289 0.25 +2.6
2,877,354 - DvMF_2289 0.28 +2.2
2,877,360 - DvMF_2289 0.28 +2.4
2,877,673 - DvMF_2289 0.69 +2.4
2,877,730 + DvMF_2289 0.77 +2.4
2,877,949 - +2.3
2,877,964 + +1.0
2,878,154 + DvMF_2290 0.13 +2.5
2,878,164 - DvMF_2290 0.14 +2.4
2,878,399 - DvMF_2290 0.31 +2.3
2,878,866 + DvMF_2290 0.64 +2.5
2,878,905 - DvMF_2290 0.67 +2.6
2,878,905 - DvMF_2290 0.67 +2.4
2,879,295 - +2.5
2,879,713 + DvMF_2291 0.12 -3.6
2,879,729 - DvMF_2291 0.14 -3.4
2,879,729 - DvMF_2291 0.14 -5.0
2,879,914 - DvMF_2291 0.39 -5.3
2,879,988 - DvMF_2291 0.48 -3.5
2,880,082 - DvMF_2291 0.61 -3.8
2,880,176 + DvMF_2291 0.73 -4.2
2,880,184 - DvMF_2291 0.74 -4.4
2,880,328 + -2.1
2,880,336 - -0.9

Or see this region's nucleotide sequence