Experiment: MoYLS4 with Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_R0054 and DvMF_2129 are separated by 912 nucleotides DvMF_2129 and DvMF_2130 are separated by 842 nucleotides
DvMF_R0054: DvMF_R0054 - tRNA-Arg (RefSeq), at 2,648,707 to 2,648,783
_R0054
DvMF_2129: DvMF_2129 - L-lactate transport (RefSeq), at 2,649,696 to 2,651,351
_2129
DvMF_2130: DvMF_2130 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,652,194 to 2,652,811
_2130
Position (kb)
2649
2650
2651
2652 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2649.149 kb on + strand at 2649.391 kb on - strand at 2649.658 kb on + strand at 2649.703 kb on + strand at 2649.749 kb on + strand at 2649.824 kb on + strand at 2650.253 kb on - strand, within DvMF_2129 at 2650.437 kb on - strand, within DvMF_2129 at 2650.568 kb on - strand, within DvMF_2129 at 2650.575 kb on - strand, within DvMF_2129 at 2650.651 kb on - strand, within DvMF_2129 at 2650.864 kb on + strand, within DvMF_2129 at 2650.887 kb on - strand, within DvMF_2129 at 2650.918 kb on - strand, within DvMF_2129 at 2650.920 kb on + strand, within DvMF_2129 at 2650.941 kb on - strand, within DvMF_2129 at 2650.989 kb on + strand, within DvMF_2129 at 2651.093 kb on + strand, within DvMF_2129 at 2651.115 kb on + strand, within DvMF_2129 at 2651.407 kb on - strand at 2651.446 kb on + strand at 2651.454 kb on - strand at 2651.612 kb on - strand at 2651.612 kb on - strand at 2651.689 kb on + strand at 2651.922 kb on - strand at 2651.959 kb on + strand at 2652.142 kb on - strand at 2652.257 kb on - strand, within DvMF_2130 at 2652.303 kb on + strand, within DvMF_2130 at 2652.315 kb on + strand, within DvMF_2130 at 2652.338 kb on - strand, within DvMF_2130
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml remove 2,649,149 + -1.0 2,649,391 - -0.2 2,649,658 + +0.2 2,649,703 + -1.2 2,649,749 + -0.3 2,649,824 + -0.4 2,650,253 - DvMF_2129 0.34 -0.5 2,650,437 - DvMF_2129 0.45 -1.2 2,650,568 - DvMF_2129 0.53 -0.1 2,650,575 - DvMF_2129 0.53 -0.4 2,650,651 - DvMF_2129 0.58 -0.7 2,650,864 + DvMF_2129 0.71 -0.5 2,650,887 - DvMF_2129 0.72 -0.6 2,650,918 - DvMF_2129 0.74 -1.1 2,650,920 + DvMF_2129 0.74 -0.6 2,650,941 - DvMF_2129 0.75 -0.8 2,650,989 + DvMF_2129 0.78 -0.6 2,651,093 + DvMF_2129 0.84 +0.0 2,651,115 + DvMF_2129 0.86 -1.0 2,651,407 - -0.4 2,651,446 + -0.9 2,651,454 - -0.6 2,651,612 - -0.6 2,651,612 - -3.3 2,651,689 + -0.7 2,651,922 - -0.6 2,651,959 + -0.1 2,652,142 - -0.1 2,652,257 - DvMF_2130 0.10 -0.8 2,652,303 + DvMF_2130 0.18 -0.4 2,652,315 + DvMF_2130 0.20 -0.6 2,652,338 - DvMF_2130 0.23 -0.4
Or see this region's nucleotide sequence