Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2080

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2079 and DvMF_2080 are separated by 559 nucleotides DvMF_2079: DvMF_2079 - NmrA family protein (RefSeq), at 2,583,531 to 2,585,348 _2079 DvMF_2080: DvMF_2080 - Peptidase M23 (RefSeq), at 2,585,908 to 2,587,233 _2080 Position (kb) 2585 2586 2587 2588Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2584.964 kb on - strand, within DvMF_2079at 2585.138 kb on + strand, within DvMF_2079at 2585.187 kb on - strandat 2585.253 kb on + strandat 2585.317 kb on - strandat 2585.353 kb on - strandat 2585.375 kb on - strandat 2585.414 kb on - strandat 2585.449 kb on + strandat 2585.555 kb on - strandat 2586.301 kb on - strand, within DvMF_2080at 2586.301 kb on - strand, within DvMF_2080at 2586.311 kb on - strand, within DvMF_2080at 2586.323 kb on - strand, within DvMF_2080at 2586.514 kb on - strand, within DvMF_2080at 2586.641 kb on - strand, within DvMF_2080at 2586.706 kb on - strand, within DvMF_2080at 2586.923 kb on - strand, within DvMF_2080at 2586.940 kb on - strand, within DvMF_2080at 2586.999 kb on + strand, within DvMF_2080at 2587.003 kb on - strand, within DvMF_2080at 2587.097 kb on + strand, within DvMF_2080at 2587.362 kb on + strandat 2587.375 kb on - strandat 2587.375 kb on - strandat 2587.432 kb on + strandat 2587.442 kb on + strandat 2587.450 kb on - strandat 2587.466 kb on - strandat 2587.471 kb on - strandat 2587.521 kb on + strandat 2587.874 kb on + strandat 2587.989 kb on - strandat 2588.033 kb on - strandat 2588.068 kb on + strandat 2588.137 kb on - strandat 2588.163 kb on - strandat 2588.174 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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2,584,964 - DvMF_2079 0.79 -0.6
2,585,138 + DvMF_2079 0.88 -0.2
2,585,187 - -0.2
2,585,253 + -0.1
2,585,317 - -1.1
2,585,353 - -0.4
2,585,375 - -0.4
2,585,414 - -0.3
2,585,449 + -0.5
2,585,555 - -0.2
2,586,301 - DvMF_2080 0.30 -6.2
2,586,301 - DvMF_2080 0.30 -3.3
2,586,311 - DvMF_2080 0.30 -6.0
2,586,323 - DvMF_2080 0.31 -3.1
2,586,514 - DvMF_2080 0.46 -3.0
2,586,641 - DvMF_2080 0.55 -4.6
2,586,706 - DvMF_2080 0.60 -3.6
2,586,923 - DvMF_2080 0.77 -3.2
2,586,940 - DvMF_2080 0.78 -5.2
2,586,999 + DvMF_2080 0.82 -3.4
2,587,003 - DvMF_2080 0.83 -5.8
2,587,097 + DvMF_2080 0.90 -2.6
2,587,362 + -1.1
2,587,375 - -1.0
2,587,375 - -1.0
2,587,432 + -0.6
2,587,442 + -0.8
2,587,450 - -0.0
2,587,466 - -0.9
2,587,471 - -0.4
2,587,521 + -2.0
2,587,874 + -0.5
2,587,989 - -1.0
2,588,033 - -0.3
2,588,068 + -0.6
2,588,137 - -1.3
2,588,163 - -0.9
2,588,174 + -0.5

Or see this region's nucleotide sequence