Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1928

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1927 and DvMF_1928 are separated by 231 nucleotidesDvMF_1928 and DvMF_1929 are separated by 37 nucleotides DvMF_1927: DvMF_1927 - glycosyl transferase family 2 (RefSeq), at 2,375,912 to 2,377,843 _1927 DvMF_1928: DvMF_1928 - FAD dependent oxidoreductase (RefSeq), at 2,378,075 to 2,379,457 _1928 DvMF_1929: DvMF_1929 - peptidase M24 (RefSeq), at 2,379,495 to 2,380,565 _1929 Position (kb) 2378 2379 2380Strain fitness (log2 ratio) -1 0 1 2at 2377.224 kb on + strand, within DvMF_1927at 2377.338 kb on - strand, within DvMF_1927at 2377.481 kb on - strand, within DvMF_1927at 2377.539 kb on - strand, within DvMF_1927at 2377.936 kb on + strandat 2378.059 kb on + strandat 2378.537 kb on + strand, within DvMF_1928at 2378.620 kb on - strand, within DvMF_1928at 2379.300 kb on + strand, within DvMF_1928at 2379.335 kb on - strandat 2379.352 kb on - strandat 2379.422 kb on - strandat 2379.680 kb on + strand, within DvMF_1929at 2379.688 kb on - strand, within DvMF_1929at 2379.701 kb on + strand, within DvMF_1929at 2379.778 kb on - strand, within DvMF_1929at 2379.859 kb on - strand, within DvMF_1929at 2379.859 kb on - strand, within DvMF_1929at 2379.908 kb on + strand, within DvMF_1929at 2380.075 kb on - strand, within DvMF_1929at 2380.156 kb on - strand, within DvMF_1929at 2380.187 kb on + strand, within DvMF_1929at 2380.210 kb on + strand, within DvMF_1929at 2380.210 kb on + strand, within DvMF_1929at 2380.252 kb on + strand, within DvMF_1929at 2380.260 kb on - strand, within DvMF_1929

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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2,377,224 + DvMF_1927 0.68 +1.2
2,377,338 - DvMF_1927 0.74 -0.4
2,377,481 - DvMF_1927 0.81 -0.4
2,377,539 - DvMF_1927 0.84 -0.4
2,377,936 + -1.7
2,378,059 + -0.3
2,378,537 + DvMF_1928 0.33 -0.0
2,378,620 - DvMF_1928 0.39 +2.0
2,379,300 + DvMF_1928 0.89 +1.1
2,379,335 - +1.2
2,379,352 - +0.8
2,379,422 - +1.7
2,379,680 + DvMF_1929 0.17 -1.6
2,379,688 - DvMF_1929 0.18 -0.6
2,379,701 + DvMF_1929 0.19 -0.4
2,379,778 - DvMF_1929 0.26 -0.4
2,379,859 - DvMF_1929 0.34 -0.1
2,379,859 - DvMF_1929 0.34 +1.3
2,379,908 + DvMF_1929 0.39 -0.1
2,380,075 - DvMF_1929 0.54 -0.7
2,380,156 - DvMF_1929 0.62 -0.1
2,380,187 + DvMF_1929 0.65 -0.2
2,380,210 + DvMF_1929 0.67 -0.2
2,380,210 + DvMF_1929 0.67 -1.0
2,380,252 + DvMF_1929 0.71 -0.2
2,380,260 - DvMF_1929 0.71 -0.3

Or see this region's nucleotide sequence