Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1903

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1902 and DvMF_1903 are separated by 144 nucleotidesDvMF_1903 and DvMF_1904 are separated by 278 nucleotides DvMF_1902: DvMF_1902 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 2,341,354 to 2,342,259 _1902 DvMF_1903: DvMF_1903 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,342,404 to 2,343,045 _1903 DvMF_1904: DvMF_1904 - hypothetical protein (RefSeq), at 2,343,324 to 2,345,327 _1904 Position (kb) 2342 2343 2344Strain fitness (log2 ratio) -1 0 1at 2341.568 kb on - strand, within DvMF_1902at 2341.661 kb on + strand, within DvMF_1902at 2341.756 kb on - strand, within DvMF_1902at 2342.002 kb on - strand, within DvMF_1902at 2342.002 kb on - strand, within DvMF_1902at 2342.598 kb on - strand, within DvMF_1903at 2342.845 kb on - strand, within DvMF_1903at 2343.032 kb on - strandat 2343.145 kb on + strandat 2343.308 kb on + strandat 2343.344 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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2,341,568 - DvMF_1902 0.24 +0.5
2,341,661 + DvMF_1902 0.34 +0.9
2,341,756 - DvMF_1902 0.44 +1.3
2,342,002 - DvMF_1902 0.72 +0.2
2,342,002 - DvMF_1902 0.72 +0.2
2,342,598 - DvMF_1903 0.30 -0.5
2,342,845 - DvMF_1903 0.69 -0.0
2,343,032 - -0.1
2,343,145 + -0.5
2,343,308 + -0.1
2,343,344 + -0.8

Or see this region's nucleotide sequence