Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1789

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1788 and DvMF_1789 are separated by 176 nucleotidesDvMF_1789 and DvMF_1790 are separated by 57 nucleotides DvMF_1788: DvMF_1788 - SNARE associated Golgi protein (RefSeq), at 2,188,081 to 2,189,025 _1788 DvMF_1789: DvMF_1789 - phosphatidylserine decarboxylase (RefSeq), at 2,189,202 to 2,189,846 _1789 DvMF_1790: DvMF_1790 - CDP-diacylglycerol/serine O-phosphatidyltransferase (RefSeq), at 2,189,904 to 2,190,653 _1790 Position (kb) 2189 2190Strain fitness (log2 ratio) -2 -1 0 1at 2188.229 kb on + strand, within DvMF_1788at 2188.247 kb on + strand, within DvMF_1788at 2188.370 kb on - strand, within DvMF_1788at 2188.542 kb on - strand, within DvMF_1788at 2188.644 kb on + strand, within DvMF_1788at 2188.692 kb on - strand, within DvMF_1788at 2188.843 kb on - strand, within DvMF_1788at 2188.977 kb on + strandat 2190.647 kb on + strandat 2190.713 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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2,188,229 + DvMF_1788 0.16 -0.3
2,188,247 + DvMF_1788 0.18 -1.0
2,188,370 - DvMF_1788 0.31 -0.5
2,188,542 - DvMF_1788 0.49 -0.4
2,188,644 + DvMF_1788 0.60 -0.5
2,188,692 - DvMF_1788 0.65 -1.2
2,188,843 - DvMF_1788 0.81 +1.6
2,188,977 + -1.8
2,190,647 + -0.5
2,190,713 + -1.0

Or see this region's nucleotide sequence