Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1592

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1591 and DvMF_1592 are separated by 978 nucleotides DvMF_1591: DvMF_1591 - hypothetical protein (RefSeq), at 1,962,768 to 1,963,142 _1591 DvMF_1592: DvMF_1592 - hypothetical protein (RefSeq), at 1,964,121 to 1,965,011 _1592 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -1 0 1at 1963.137 kb on + strandat 1963.359 kb on + strandat 1963.559 kb on + strandat 1963.611 kb on - strandat 1963.875 kb on - strandat 1963.942 kb on - strandat 1963.944 kb on - strandat 1963.990 kb on - strandat 1964.136 kb on + strandat 1964.194 kb on - strandat 1964.217 kb on + strand, within DvMF_1592at 1964.236 kb on + strand, within DvMF_1592at 1964.386 kb on + strand, within DvMF_1592at 1964.747 kb on + strand, within DvMF_1592at 1965.252 kb on + strandat 1965.404 kb on - strandat 1965.526 kb on - strandat 1965.552 kb on - strandat 1965.627 kb on - strandat 1965.634 kb on + strandat 1965.705 kb on + strandat 1965.713 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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1,963,137 + -1.4
1,963,359 + -0.6
1,963,559 + -0.2
1,963,611 - -0.6
1,963,875 - -0.4
1,963,942 - -0.1
1,963,944 - -0.6
1,963,990 - -0.5
1,964,136 + -1.5
1,964,194 - -0.8
1,964,217 + DvMF_1592 0.11 -1.1
1,964,236 + DvMF_1592 0.13 -1.5
1,964,386 + DvMF_1592 0.30 -0.8
1,964,747 + DvMF_1592 0.70 -0.4
1,965,252 + -0.9
1,965,404 - -0.4
1,965,526 - -1.2
1,965,552 - -1.6
1,965,627 - -0.5
1,965,634 + -0.2
1,965,705 + -0.9
1,965,713 - -0.6

Or see this region's nucleotide sequence