Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1399

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1398 and DvMF_1399 are separated by 487 nucleotidesDvMF_1399 and DvMF_1400 are separated by 120 nucleotidesDvMF_1400 and DvMF_1401 overlap by 65 nucleotides DvMF_1398: DvMF_1398 - ATP-dependent reduction of co(II)balamin (RamA-like) (from data), at 1,704,829 to 1,706,886 _1398 DvMF_1399: DvMF_1399 - Ribosomal small subunit Rsm22 (RefSeq), at 1,707,374 to 1,710,295 _1399 DvMF_1400: DvMF_1400 - lipoate-protein ligase B (RefSeq), at 1,710,416 to 1,711,072 _1400 DvMF_1401: DvMF_1401 - lipoyl synthase (RefSeq), at 1,711,008 to 1,711,910 _1401 Position (kb) 1707 1708 1709 1710 1711Strain fitness (log2 ratio) -1 0 1at 1706.380 kb on - strand, within DvMF_1398at 1706.801 kb on - strandat 1706.986 kb on + strandat 1707.392 kb on + strandat 1707.447 kb on + strandat 1707.457 kb on + strandat 1707.596 kb on + strandat 1707.740 kb on - strand, within DvMF_1399at 1707.913 kb on - strand, within DvMF_1399at 1708.096 kb on - strand, within DvMF_1399at 1708.141 kb on + strand, within DvMF_1399at 1708.306 kb on + strand, within DvMF_1399at 1708.433 kb on + strand, within DvMF_1399at 1708.553 kb on - strand, within DvMF_1399at 1708.926 kb on + strand, within DvMF_1399at 1708.944 kb on + strand, within DvMF_1399at 1709.077 kb on - strand, within DvMF_1399at 1709.109 kb on + strand, within DvMF_1399at 1709.193 kb on - strand, within DvMF_1399at 1709.990 kb on + strand, within DvMF_1399at 1710.156 kb on + strandat 1710.156 kb on + strandat 1710.174 kb on - strandat 1710.423 kb on + strandat 1710.740 kb on - strand, within DvMF_1400at 1710.762 kb on + strand, within DvMF_1400at 1710.842 kb on + strand, within DvMF_1400at 1711.115 kb on + strand, within DvMF_1401

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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1,706,380 - DvMF_1398 0.75 +0.5
1,706,801 - -0.1
1,706,986 + -0.8
1,707,392 + +1.2
1,707,447 + +1.3
1,707,457 + +1.5
1,707,596 + +1.3
1,707,740 - DvMF_1399 0.13 +1.3
1,707,913 - DvMF_1399 0.18 +1.6
1,708,096 - DvMF_1399 0.25 +0.7
1,708,141 + DvMF_1399 0.26 +1.3
1,708,306 + DvMF_1399 0.32 +1.5
1,708,433 + DvMF_1399 0.36 +1.3
1,708,553 - DvMF_1399 0.40 +0.1
1,708,926 + DvMF_1399 0.53 -0.7
1,708,944 + DvMF_1399 0.54 -0.3
1,709,077 - DvMF_1399 0.58 +0.8
1,709,109 + DvMF_1399 0.59 +0.6
1,709,193 - DvMF_1399 0.62 +0.7
1,709,990 + DvMF_1399 0.90 +0.4
1,710,156 + +0.0
1,710,156 + +0.5
1,710,174 - +0.2
1,710,423 + -0.7
1,710,740 - DvMF_1400 0.49 -0.5
1,710,762 + DvMF_1400 0.53 -0.4
1,710,842 + DvMF_1400 0.65 -0.5
1,711,115 + DvMF_1401 0.12 -0.9

Or see this region's nucleotide sequence